Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025031

Physical Location & Seq

Genomic Coordinates Forward (+)

48448080 .. 48448901

Gene Structure 822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTTAAGAAGAATGGCCAATTACTCAACTTATGAGAACGATGAAAAATTAGCTACATTATCCCATGCTATTATATCAAACACAACTGTTTCAAGAACAGAGTCTGTTAGTAGAAACCCAGTGGCTTCTGAAGCTGGTGGCTTGAGTGGGAAACCACTATTTGATACCTCTACCAGACTCTTAAAGGATATGTACCTGTTGACAAGGGTGGGTCCTCACTGTCATTTATATTTTTATCATTTTGATTTGTTCTTACATCTGTATAGTTTGTTTTTTCCTCTTGTTTATTTGAGATGTCTTGTACGCACTCTACTCTTTGTGCACTTGGGTATCATATATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004152 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016491 GO:0016627 GO:0016635 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0055086 GO:0055114 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

114

Amino Acids

13.17

Weight (kDa)

8.86

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHO_dh	PF01180	18 - 68	6.2e-06	Dihydroorotate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025031)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0050041
rosa_laevigata	RLG00000003759 RLG00000009578

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	194, 303
AgsI	TTSAA	1 cut(s)	93
AluBI	AGCT	2 cut(s)	53, 134
AluI	AGCT	2 cut(s)	53, 134
Alw21I	GWGCWC	1 cut(s)	324
Alw44I	GTGCAC	1 cut(s)	320
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	15
ApaLI	GTGCAC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	324
BaeI	ACNNNNGTAYC	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	113
BmuI	ACTGGG	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	324
BshFI	GGCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	324
BspANI	GGCC	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	88, 221
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	126, 217
CaiI	CAGNNNCTG	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	193, 302
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	5 cut(s)	17, 53, 125, 134, 141
CviKI_1	RGCY	5 cut(s)	17, 53, 125, 134, 141
CviQI	GTAC	2 cut(s)	193, 302
EaeI	YGGCCR	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	212
FaeI	CATG	1 cut(s)	68
FaiI	YATR	8 cut(s)	33, 66, 74, 191, 229, 264, 335, 337
FatI	CATG	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	2 cut(s)	101, 177
Hpy166II	GTNNAC	2 cut(s)	201, 322
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	93
Hpy8I	GTNNAC	2 cut(s)	201, 322
HpyCH4III	ACNGT	2 cut(s)	88, 221
HpyCH4V	TGCA	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	68
LpnPI	CCDG	4 cut(s)	120, 132, 187, 209
MboII	GAAGA	1 cut(s)	21
MhlI	GDGCHC	1 cut(s)	324
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	2 cut(s)	19, 47
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	110, 171
MnlI	CCTC	3 cut(s)	178, 225, 288
Mox20I	TGGCCA	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	3 cut(s)	5, 182, 343
Msp20I	TGGCCA	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	213
PleI	GAGTC	2 cut(s)	109, 171
PpsI	GAGTC	2 cut(s)	109, 171
PpuMI	RGGWCCY	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	212
PspPPI	RGGWCCY	1 cut(s)	212
PstNI	CAGNNNCTG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	194, 303
RsaNI	GTAC	2 cut(s)	193, 302
SaqAI	TTAA	3 cut(s)	5, 182, 343
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	2 cut(s)	110, 171
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	4 cut(s)	55, 136, 170, 198
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	2 cut(s)	19, 47
TaaI	ACNGT	2 cut(s)	88, 221
TasI	AATT	2 cut(s)	19, 47
Tru1I	TTAA	3 cut(s)	5, 182, 343
Tru9I	TTAA	3 cut(s)	5, 182, 343
TscAI	CASTG	2 cut(s)	126, 224
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	2 cut(s)	126, 224
VneI	GTGCAC	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.