Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0025031

Physical Location & Seq

Genomic Coordinates Reverse (-)

52351861 .. 52354858

Gene Structure 2998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003759

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCCAATTACTCAACTTATGAGAAAGATGGAAAATTGGCTACATTATCCCACGCTATTATATCAAACACAACTGTTTCAAGACCAGAGTCTGTTAGTAGAAACCCAGTGGCTTCTGAAGCTGGTGGTTTGAGTGGGAAACCACTATTTGATACCTCTACCAGACTCTTAAAGGATATGTACCTGTTGACAAGGAGCTCAAAACTTTTTGACTTGTTATCTGTTATCAATCATGGACAGATTCCTTTAGTAGGGTGTGGGGGTATTAGTAGGTGGCAAGGTTGCTTCATTTCTTCTGAGGTTGCTGCATTGACTTTGAGTTTGCATGGACTTGTGAACACAATAGGGAACCTTCTCCTGATTCTAAAATGCGGAGTCGAGGCCGACGCAGACGGCAAGCTAGGGCTCCAATCATGGACAGATTCGCAAATTCAAGCTGTATATTCCCTCGCCTACGCCGTTGTCTCCTCCTCTCGATCTCTCTCAGGTATTATGTGGAGTAAGGGCTACATAGGAGTAAAGATCGCTGCAGATAAAGGTTTGAAGCATGTTAAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004152 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016491 GO:0016627 GO:0016635 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0055086 GO:0055114 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

187

Amino Acids

19.79

Weight (kDa)

9.15

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHO_dh	PF01180	15 - 90	1.3e-06	Dihydroorotate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0025031)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0050041
rosa_laevigata	RLG00000003759 RLG00000009578

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	429
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	81, 434, 544
AluBI	AGCT	4 cut(s)	122, 198, 400, 437
AluI	AGCT	4 cut(s)	122, 198, 400, 437
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	469
AlwNI	CAGNNNCTG	1 cut(s)	92
AoxI	GGCC	2 cut(s)	3, 381
ApeKI	GCWGC	2 cut(s)	305, 527
ApoI	RAATTY	1 cut(s)	429
ArsI	GACNNNNNNTTYG	2 cut(s)	304, 336
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	200, 408
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	292, 514
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	2 cut(s)	409, 443
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	2 cut(s)	401, 559
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	2 cut(s)	306, 528
BlsI	GCNGC	2 cut(s)	307, 529
BmiI	GGNNCC	2 cut(s)	350, 407
BmrI	ACTGGG	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	101
BoxI	GACNNNNGTC	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	288, 498
BseNI	ACTGG	1 cut(s)	107
BseRI	GAGGAG	2 cut(s)	457, 460
BseXI	GCAGC	2 cut(s)	292, 514
BshFI	GGCC	2 cut(s)	5, 383
BsiHKAI	GWGCWC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	469
BsnI	GGCC	2 cut(s)	5, 383
Bsp1286I	GDGCHC	2 cut(s)	200, 408
Bsp143I	GATC	2 cut(s)	476, 522
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	2 cut(s)	5, 383
BspCNI	CTCAG	2 cut(s)	289, 497
BspLI	GGNNCC	2 cut(s)	350, 407
BspMAI	CTGCAG	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	107
BssMI	GATC	2 cut(s)	476, 522
Bst4CI	ACNGT	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	2 cut(s)	297, 484
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstKTI	GATC	2 cut(s)	479, 525
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	2 cut(s)	476, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	551
BstPAI	GACNNNNGTC	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	292, 514
BsuRI	GGCC	2 cut(s)	5, 383
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	398
CaiI	CAGNNNCTG	1 cut(s)	92
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	4 cut(s)	233, 326, 414, 548
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	297, 484
DpnI	GATC	2 cut(s)	478, 524
DpnII	GATC	2 cut(s)	476, 522
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	198
Eco24I	GRGCYC	2 cut(s)	200, 408
Eco53kI	GAGCTC	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	198
EcoNI	CCTNNNNNAGG	1 cut(s)	249
EcoT38I	GRGCYC	2 cut(s)	200, 408
FaeI	CATG	4 cut(s)	236, 329, 417, 551
FatI	CATG	4 cut(s)	232, 325, 413, 547
Fnu4HI	GCNGC	2 cut(s)	306, 528
FriOI	GRGCYC	2 cut(s)	200, 408
Fsp4HI	GCNGC	2 cut(s)	306, 528
FspBI	CTAG	2 cut(s)	401, 559
GluI	GCNGC	2 cut(s)	306, 528
HaeIII	GGCC	2 cut(s)	5, 383
HgaI	GACGC	1 cut(s)	395
Hin1II	CATG	4 cut(s)	236, 329, 417, 551
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	6 cut(s)	89, 165, 241, 361, 375, 422
Hpy166II	GTNNAC	2 cut(s)	189, 337
Hpy188I	TCNGA	2 cut(s)	118, 298
Hpy188III	TCNNGA	3 cut(s)	81, 358, 474
Hpy8I	GTNNAC	2 cut(s)	189, 337
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	308, 325, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	297, 484
Hsp92II	CATG	4 cut(s)	236, 329, 417, 551
Kzo9I	GATC	2 cut(s)	476, 522
LmnI	GCTCC	2 cut(s)	195, 411
LpnPI	CCDG	7 cut(s)	99, 108, 120, 175, 197, 371, 471
Lsp1109I	GCAGC	2 cut(s)	292, 514
MaeI	CTAG	2 cut(s)	401, 559
MalI	GATC	2 cut(s)	478, 524
MboI	GATC	2 cut(s)	476, 522
MboII	GAAGA	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	200, 408
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	7, 35, 429
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	98, 159, 384
MnlI	CCTC	6 cut(s)	166, 292, 373, 458, 478, 481
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	170, 552
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	2 cut(s)	476, 522
NlaIII	CATG	4 cut(s)	236, 329, 417, 551
NlaIV	GGNNCC	2 cut(s)	350, 407
NspI	RCATGY	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PfeI	GAWTC	3 cut(s)	241, 361, 422
PkrI	GCNGC	2 cut(s)	307, 529
PleI	GAGTC	3 cut(s)	97, 159, 383
PpsI	GAGTC	3 cut(s)	97, 159, 383
PshAI	GACNNNNGTC	1 cut(s)	88
Psp124BI	GAGCTC	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	350, 407
PstI	CTGCAG	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	92
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SacI	GAGCTC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	170, 552
SatI	GCNGC	2 cut(s)	306, 528
Sau3AI	GATC	2 cut(s)	476, 522
SchI	GAGTC	3 cut(s)	98, 159, 384
SduI	GDGCHC	2 cut(s)	200, 408
SfcI	CTRYAG	1 cut(s)	528
Sse9I	AATT	3 cut(s)	7, 35, 429
SsiI	CCGC	1 cut(s)	372
SspMI	CTAG	2 cut(s)	401, 559
SstI	GAGCTC	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	378, 475
TasI	AATT	3 cut(s)	7, 35, 429
TfiI	GAWTC	3 cut(s)	241, 361, 422
Tru1I	TTAA	2 cut(s)	170, 552
Tru9I	TTAA	2 cut(s)	170, 552
TscAI	CASTG	1 cut(s)	114
TseI	GCWGC	2 cut(s)	305, 527
TspDTI	ATGAA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	249
XapI	RAATTY	1 cut(s)	429
XceI	RCATGY	1 cut(s)	551
XspI	CTAG	2 cut(s)	401, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.