Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030298

Physical Location & Seq

Genomic Coordinates Reverse (-)

54615110 .. 54620172

Gene Structure 5063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCCCTCAAACCCCCAATCCCTCATCCTCCTCCGCCTGTTCTGCTCCACCGAAACCCCAACCGGATCCCCACCCGACCCGCAAACCCCAAGACCCAGGCAGCTGCGTCGGAAAAGCCCGAGGACATCATCTGCAGAATGATGGCCAATCGGGCCTGGACGACCCGGTTGCAGAACTCCATCCTCGATTTGGTACCCGAATTCGATCACAATCTCGTCTGGAATGTCCTTCACGCAGCTAACACCTCCGACCAAGCCCTCCAATTCTTCCGGTGGGTCGAGCGTTCCAGGGTTGGTATGGGAAAACACAAACAAGAAATAAAAACAGGAATACAAAAGAGAGGAGAACATGCAGAAACCAAAGTGGAGTACACGATGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

127

Amino Acids

14.55

Weight (kDa)

9.91

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030298)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0052611
rosa_samantha	Rh5BG354000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	193
AciI	CCGC	2 cut(s)	35, 81
AclWI	GGATC	2 cut(s)	61, 74
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	2 cut(s)	195, 371
AfiI	CCNNNNNNNGG	1 cut(s)	190
AjnI	CCWGG	3 cut(s)	96, 155, 287
AluBI	AGCT	3 cut(s)	104, 239, 381
AluI	AGCT	3 cut(s)	104, 239, 381
AlwI	GGATC	2 cut(s)	61, 74
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	3 cut(s)	3, 144, 153
ApeKI	GCWGC	3 cut(s)	101, 104, 236
ApoI	RAATTY	1 cut(s)	200
Asp718I	GGTACC	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	4, 153
AsuC2I	CCSGG	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	193
BbvI	GCAGC	3 cut(s)	91, 113, 248
BccI	CCATC	2 cut(s)	136, 188
BcgI	CGANNNNNNTGC	4 cut(s)	90, 124, 151, 185
BciT130I	CCWGG	3 cut(s)	98, 157, 289
BcnI	CCSGG	1 cut(s)	166
BfmI	CTRYAG	1 cut(s)	133
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	3 cut(s)	102, 105, 237
BlsI	GCNGC	3 cut(s)	103, 106, 238
Bme1390I	CCNGG	4 cut(s)	98, 157, 166, 289
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	4, 153
BmiI	GGNNCC	2 cut(s)	68, 195
BmrFI	CCNGG	4 cut(s)	98, 157, 166, 289
BpuMI	CCSGG	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	96, 120, 288
BsaWI	WCCGGW	2 cut(s)	63, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	3 cut(s)	98, 157, 289
BseDI	CCNNGG	3 cut(s)	96, 120, 288
BseGI	GGATG	2 cut(s)	25, 180
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseRI	GAGGAG	2 cut(s)	21, 357
BseXI	GCAGC	3 cut(s)	91, 113, 248
BshFI	GGCC	3 cut(s)	5, 146, 155
BshNI	GGYRCC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	64, 166, 271
BslI	CCNNNNNNNGG	1 cut(s)	190
BsnI	GGCC	3 cut(s)	5, 146, 155
BsoBI	CYCGRG	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	66, 205
BspACI	CCGC	2 cut(s)	35, 81
BspANI	GGCC	3 cut(s)	5, 146, 155
BspLI	GGNNCC	2 cut(s)	68, 195
BspMAI	CTGCAG	1 cut(s)	137
BspPI	GGATC	2 cut(s)	61, 74
BspT107I	GGYRCC	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	96, 120, 288
BssMI	GATC	2 cut(s)	66, 205
Bst2UI	CCWGG	3 cut(s)	98, 157, 289
BstF5I	GGATG	2 cut(s)	25, 180
BstKTI	GATC	2 cut(s)	69, 208
BstMBI	GATC	2 cut(s)	66, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 152
BstNI	CCWGG	3 cut(s)	98, 157, 289
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	4 cut(s)	96, 155, 164, 287
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	3 cut(s)	91, 113, 248
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	5, 146, 155
BtsCI	GGATG	2 cut(s)	25, 180
Cfr13I	GGNCC	2 cut(s)	4, 153
CseI	GACGC	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	194, 370
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	8 cut(s)	5, 104, 118, 146, 155, 239, 257, 381
CviKI_1	RGCY	8 cut(s)	5, 104, 118, 146, 155, 239, 257, 381
CviQI	GTAC	2 cut(s)	194, 370
DpnI	GATC	2 cut(s)	68, 207
DpnII	GATC	2 cut(s)	66, 205
EaeI	YGGCCR	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	3 cut(s)	96, 155, 287
FaeI	CATG	1 cut(s)	353
FaiI	YATR	2 cut(s)	299, 351
FatI	CATG	1 cut(s)	349
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	102, 105, 237
FokI	GGATG	2 cut(s)	12, 167
Fsp4HI	GCNGC	3 cut(s)	102, 105, 237
GluI	GCNGC	3 cut(s)	102, 105, 237
HaeIII	GGCC	3 cut(s)	5, 146, 155
HapII	CCGG	3 cut(s)	64, 166, 271
HgaI	GACGC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	353
HpaII	CCGG	3 cut(s)	64, 166, 271
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	2 cut(s)	112, 250
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	372
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	239
HpyCH4V	TGCA	3 cut(s)	135, 172, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 152
Hsp92II	CATG	1 cut(s)	353
KpnI	GGTACC	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	66, 205
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	3 cut(s)	91, 113, 248
MalI	GATC	2 cut(s)	68, 207
MboI	GATC	2 cut(s)	66, 205
MboII	GAAGA	1 cut(s)	259
MflI	RGATCY	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	2 cut(s)	200, 263
MluNI	TGGCCA	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	90, 273
MnlI	CCTC	9 cut(s)	17, 33, 39, 42, 115, 194, 256, 269, 335
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	3 cut(s)	64, 166, 271
MspR9I	CCNGG	4 cut(s)	98, 157, 166, 289
MvaI	CCWGG	3 cut(s)	98, 157, 289
MwoI	GCNNNNNNNGC	2 cut(s)	43, 152
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	2 cut(s)	66, 205
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	2 cut(s)	68, 195
NspI	RCATGY	1 cut(s)	353
PkrI	GCNGC	3 cut(s)	103, 106, 238
Psp6I	CCWGG	3 cut(s)	96, 155, 287
PspGI	CCWGG	3 cut(s)	96, 155, 287
PspN4I	GGNNCC	2 cut(s)	68, 195
PspPI	GGNCC	2 cut(s)	4, 153
PstI	CTGCAG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	195, 371
RsaNI	GTAC	2 cut(s)	194, 370
SatI	GCNGC	3 cut(s)	102, 105, 237
Sau3AI	GATC	2 cut(s)	66, 205
Sau96I	GGNCC	2 cut(s)	4, 153
ScrFI	CCNGG	4 cut(s)	98, 157, 166, 289
SetI	ASST	4 cut(s)	106, 241, 248, 383
SfcI	CTRYAG	1 cut(s)	133
SfiI	GGCCNNNNNGGCC	1 cut(s)	152
Sse9I	AATT	2 cut(s)	200, 263
SsiI	CCGC	2 cut(s)	35, 81
StyD4I	CCNGG	4 cut(s)	96, 155, 164, 287
TaqI	TCGA	3 cut(s)	186, 204, 279
TasI	AATT	2 cut(s)	200, 263
TatI	WGTACW	1 cut(s)	369
TseI	GCWGC	3 cut(s)	101, 104, 236
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	2 cut(s)	187, 295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.