Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0030298

Physical Location & Seq

Genomic Coordinates Forward (+)

54836884 .. 54837578

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG354000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCCCTCAAACCCCCAATCCCTCATCCTCCTCCGCCTGTTCTGCTCCACCGAAACCCCAACCGGATCCCCACCCGACCCGCAAACCCCAAGACCCAGGCAGCTGCGTCGGAAAAGCCCGAGGACATCATCTGCAGAATGATGGCCAATCGGGCCTGGACGACCCGGTTGCAGAACTCCATCCTCGATTTGGTACCCGAATTCGATCACAATCTCGTCTGGAATGTCCTTCACGCAGCTAACACCTCCGACCAAGCCCTCCAATTCTTCCGGTGGGTCGAGCGTTCCAGTTATGGAAAGGCTGGCATTGTTCAGGAGTCGGTTAAGCTTTTCAATCAGATGAAGGAATTGGGTGTGGAGCGAAGTCTCAAGTCGTATGAGGCTCTGTTTAAGAGCATTTTGCGGAGGGGGCGGTATATGACATGTTGGCTGAGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

146

Amino Acids

16.89

Weight (kDa)

9.94

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030298)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0052611
rosa_samantha	Rh5BG354000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	193
AciI	CCGC	4 cut(s)	35, 81, 403, 412
AclWI	GGATC	2 cut(s)	61, 74
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	334
AjnI	CCWGG	2 cut(s)	96, 155
AluBI	AGCT	3 cut(s)	104, 239, 328
AluI	AGCT	3 cut(s)	104, 239, 328
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	2 cut(s)	61, 74
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	3 cut(s)	3, 144, 153
ApeKI	GCWGC	3 cut(s)	101, 104, 236
ApoI	RAATTY	1 cut(s)	200
Asp718I	GGTACC	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	4, 153
AsuC2I	CCSGG	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	193
BbvCI	CCTCAGC	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	91, 113, 248
BccI	CCATC	2 cut(s)	136, 188
BcgI	CGANNNNNNTGC	4 cut(s)	90, 124, 151, 185
BciT130I	CCWGG	2 cut(s)	98, 157
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	371
BfmI	CTRYAG	1 cut(s)	133
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	3 cut(s)	102, 105, 237
BlsI	GCNGC	3 cut(s)	103, 106, 238
Bme1390I	CCNGG	3 cut(s)	98, 157, 166
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	4, 153
BmiI	GGNNCC	2 cut(s)	68, 195
BmrFI	CCNGG	3 cut(s)	98, 157, 166
Bpu10I	CCTNAGC	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	96, 120
BsaWI	WCCGGW	2 cut(s)	63, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	98, 157
BseDI	CCNNGG	2 cut(s)	96, 120
BseGI	GGATG	2 cut(s)	25, 180
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	3 cut(s)	91, 113, 248
BshFI	GGCC	3 cut(s)	5, 146, 155
BshNI	GGYRCC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	64, 166, 271
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	371
BsnI	GGCC	3 cut(s)	5, 146, 155
BsoBI	CYCGRG	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	66, 205
BspACI	CCGC	4 cut(s)	35, 81, 403, 412
BspANI	GGCC	3 cut(s)	5, 146, 155
BspCNI	CTCAG	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	68, 195
BspMAI	CTGCAG	1 cut(s)	137
BspPI	GGATC	2 cut(s)	61, 74
BspT107I	GGYRCC	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	96, 120
BssMI	GATC	2 cut(s)	66, 205
Bst2UI	CCWGG	2 cut(s)	98, 157
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	25, 180
BstKTI	GATC	2 cut(s)	69, 208
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	2 cut(s)	66, 205
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 152, 409
BstNI	CCWGG	2 cut(s)	98, 157
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	3 cut(s)	96, 155, 164
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	3 cut(s)	91, 113, 248
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	5, 146, 155
BtsCI	GGATG	2 cut(s)	25, 180
Cac8I	GCNNGC	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	4, 153
CseI	GACGC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	1 cut(s)	423
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	2 cut(s)	68, 207
DpnII	GATC	2 cut(s)	66, 205
EaeI	YGGCCR	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	2 cut(s)	96, 155
FaeI	CATG	1 cut(s)	426
FaiI	YATR	5 cut(s)	294, 378, 417, 419, 424
FatI	CATG	1 cut(s)	422
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	102, 105, 237
FokI	GGATG	2 cut(s)	12, 167
Fsp4HI	GCNGC	3 cut(s)	102, 105, 237
GluI	GCNGC	3 cut(s)	102, 105, 237
HaeIII	GGCC	3 cut(s)	5, 146, 155
HapII	CCGG	3 cut(s)	64, 166, 271
HgaI	GACGC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	426
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	3 cut(s)	64, 166, 271
Hpy188I	TCNGA	3 cut(s)	112, 250, 339
Hpy188III	TCNNGA	2 cut(s)	220, 314
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	239, 337
HpyCH4V	TGCA	2 cut(s)	135, 172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 152, 409
HpyF3I	CTNAG	1 cut(s)	431
Hsp92II	CATG	1 cut(s)	426
KpnI	GGTACC	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	66, 205
LmnI	GCTCC	2 cut(s)	51, 358
Lsp1109I	GCAGC	3 cut(s)	91, 113, 248
MalI	GATC	2 cut(s)	68, 207
MboI	GATC	2 cut(s)	66, 205
MboII	GAAGA	1 cut(s)	259
MflI	RGATCY	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	3 cut(s)	200, 263, 347
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	2 cut(s)	90, 273
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	2 cut(s)	324, 390
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	3 cut(s)	64, 166, 271
MspR9I	CCNGG	3 cut(s)	98, 157, 166
MvaI	CCWGG	2 cut(s)	98, 157
MwoI	GCNNNNNNNGC	3 cut(s)	43, 152, 409
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	2 cut(s)	66, 205
NlaIII	CATG	1 cut(s)	426
NlaIV	GGNNCC	2 cut(s)	68, 195
NspI	RCATGY	1 cut(s)	426
PciI	ACATGT	1 cut(s)	422
PkrI	GCNGC	3 cut(s)	103, 106, 238
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PscI	ACATGT	1 cut(s)	422
Psp6I	CCWGG	2 cut(s)	96, 155
PspGI	CCWGG	2 cut(s)	96, 155
PspN4I	GGNNCC	2 cut(s)	68, 195
PspPI	GGNCC	2 cut(s)	4, 153
PstI	CTGCAG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	324, 390
SatI	GCNGC	3 cut(s)	102, 105, 237
Sau3AI	GATC	2 cut(s)	66, 205
Sau96I	GGNCC	2 cut(s)	4, 153
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	3 cut(s)	98, 157, 166
SetI	ASST	4 cut(s)	106, 241, 248, 330
SfcI	CTRYAG	1 cut(s)	133
SfiI	GGCCNNNNNGGCC	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	200, 263, 347
SsiI	CCGC	4 cut(s)	35, 81, 403, 412
StyD4I	CCNGG	3 cut(s)	96, 155, 164
TaqI	TCGA	3 cut(s)	186, 204, 279
TasI	AATT	3 cut(s)	200, 263, 347
Tru1I	TTAA	2 cut(s)	324, 390
Tru9I	TTAA	2 cut(s)	324, 390
TseI	GCWGC	3 cut(s)	101, 104, 236
TspDTI	ATGAA	1 cut(s)	356
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.