RchiOBHm_Chr5g0054421

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0025042
Physical Location & Seq
Reverse (-)
57008855 .. 57009423
569 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGCCAGTTGGACGTGGAAAAACCTATCTTCTTCGGATCATTAGTGCAGTAATGGATGAAGAGCTATTCTTCGGCATTGCACATCACAAGCTGATATTAGTCGGAAAAGATGGTTCCTATACAAAACAAGTTGGAACCTCCTACATAATGATAGCCCCTGGCCAATCCATGGACCTGTTATTAGAAGCAAACCAACCTAATGGGCTCTATGTCATGGCTGCAAGAGTTTTTTTTTTTTTTAACTTTGTCAAGGGAAACCCAAAGGCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

90

Amino Acids

10.03

Weight (kDa)

9.4

Isoelectric Point (pI)

22.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 3 - 78 2.8e-21 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025042)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0054421
rosa_rugosa Rorug05G0286100
rosa_samantha Rh5CG391600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 169
AclWI GGATC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 169
AjiI CACGTC 1 cut(s) 14
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 2 cut(s) 64, 91
AluI AGCT 2 cut(s) 64, 91
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 172
AvaII GGWCC 1 cut(s) 172
BalI TGGCCA 1 cut(s) 162
BanII GRGCYC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 159
BfaI CTAG 1 cut(s) 271
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 2 cut(s) 115, 136
BmrFI CCNGG 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 157, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 5
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 157, 168
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 5
BseXI GCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 66
BshFI GGCC 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 168
BspANI GGCC 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 115, 136
BspPI GGATC 1 cut(s) 44
BspQI GCTCTTC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 157, 168
BssMI GATC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 200
BsuRI GGCC 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 168
BtrI CACGTC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 172
CviAII CATG 2 cut(s) 169, 214
CviJI RGCY 7 cut(s) 64, 91, 155, 162, 205, 218, 266
CviKI_1 RGCY 7 cut(s) 64, 91, 155, 162, 205, 218, 266
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 172, 217
FaiI YATR 5 cut(s) 120, 146, 170, 210, 215
FatI CATG 2 cut(s) 168, 213
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 271
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 162
Hin1II CATG 2 cut(s) 172, 217
Hpy188I TCNGA 2 cut(s) 36, 104
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 3 cut(s) 47, 80, 221
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 2 cut(s) 172, 217
Kzo9I GATC 1 cut(s) 36
LguI GCTCTTC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 18, 144, 171, 188
Lsp1109I GCAGC 1 cut(s) 205
MaeI CTAG 1 cut(s) 271
MaeII ACGT 1 cut(s) 13
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 4 cut(s) 20, 23, 61, 71
MhlI GDGCHC 1 cut(s) 207
MlsI TGGCCA 1 cut(s) 162
MluNI TGGCCA 1 cut(s) 162
MmeI TCCRAC 2 cut(s) 82, 112
MnlI CCTC 1 cut(s) 148
Mox20I TGGCCA 1 cut(s) 162
MscI TGGCCA 1 cut(s) 162
MseI TTAA 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
NcoI CCATGG 1 cut(s) 168
NdeII GATC 1 cut(s) 36
NlaIII CATG 2 cut(s) 172, 217
NlaIV GGNNCC 2 cut(s) 115, 136
PciSI GCTCTTC 1 cut(s) 54
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 2 cut(s) 115, 136
PspPI GGNCC 1 cut(s) 172
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 207
SetI ASST 7 cut(s) 16, 26, 66, 93, 140, 177, 199
SinI GGWCC 1 cut(s) 172
SspMI CTAG 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 1 cut(s) 168
TaiI ACGT 1 cut(s) 16
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 72
Van91I CCANNNNNTGG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 172
XspI CTAG 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.