Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030284

Physical Location & Seq

Genomic Coordinates Forward (+)

60365850 .. 60366346

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAACTTGGACTTAGAGGCCGGACCGACCCGCCGGCTATACTCTTCTATGGTTGAGAGCCCAGAGGTCCGTTACGCCTCCATTAGCAAAGTCTACGCCATCCTTACTATCCAGCTACTCCTCACCATAGTCATCGTCGACACTATGGATTTGGTCCATCTGATCGCCCACTTCCTATTCAAAACCCTCACCGGCTTCGGTGTCGACATCGATGTCTTCGTCATGGCACTCGTCGTGTTAGTTCTGACCATTGTGATTTTCATTAGCTTGAAAATCTATACATTCTGGGTTGCAAGGAGAGGCCATGATTTCAGCTTCCTTGGTCTTTTTTTGTATGCAGCTCTGATTGTTTTTAGGCAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009826 GO:0009987 GO:0010033 GO:0010941 GO:0014070 GO:0016043 GO:0016049 GO:0022603 GO:0023052 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0043207 GO:0043401 GO:0048519 GO:0048523 GO:0048545 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0060560 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071840 GO:0098542 GO:1901700 GO:1901701 GO:1905421 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

121

Amino Acids

13.76

Weight (kDa)

6.81

Isoelectric Point (pI)

21.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0056651
rosa_laevigata	RLG00000035116

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
AccI	GTMKAC	3 cut(s)	93, 138, 204
AciI	CCGC	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	181, 271
AluBI	AGCT	4 cut(s)	115, 267, 315, 341
AluI	AGCT	4 cut(s)	115, 267, 315, 341
AoxI	GGCC	2 cut(s)	18, 301
ApeKI	GCWGC	1 cut(s)	338
AspS9I	GGNCC	3 cut(s)	23, 67, 154
AsuHPI	GGTGA	2 cut(s)	115, 181
AvaII	GGWCC	3 cut(s)	23, 67, 154
BanII	GRGCYC	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	2 cut(s)	107, 165
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme18I	GGWCC	3 cut(s)	23, 67, 154
BmgT120I	GGNCC	3 cut(s)	23, 67, 154
BpiI	GAAGAC	1 cut(s)	208
Bsa29I	ATCGAT	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	319
Bse118I	RCCGGY	2 cut(s)	33, 191
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	350
BshFI	GGCC	2 cut(s)	20, 303
BshVI	ATCGAT	1 cut(s)	210
BsiSI	CCGG	3 cut(s)	21, 34, 192
BsnI	GGCC	2 cut(s)	20, 303
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	2 cut(s)	20, 303
BspDI	ATCGAT	1 cut(s)	210
BsrFI	RCCGGY	2 cut(s)	33, 191
BssAI	RCCGGY	2 cut(s)	33, 191
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	20, 303
BsuTUI	ATCGAT	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	365
Cac8I	GCNNGC	1 cut(s)	35
Cfr10I	RCCGGY	2 cut(s)	33, 191
Cfr13I	GGNCC	3 cut(s)	23, 67, 154
ClaI	ATCGAT	1 cut(s)	210
CpoI	CGGWCCG	1 cut(s)	23
CspI	CGGWCCG	1 cut(s)	23
CviAII	CATG	2 cut(s)	223, 305
CviJI	RGCY	9 cut(s)	20, 37, 60, 115, 195, 267, 303, 315, 341
CviKI_1	RGCY	9 cut(s)	20, 37, 60, 115, 195, 267, 303, 315, 341
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	62
Eco47I	GGWCC	3 cut(s)	23, 67, 154
EcoT14I	CCWWGG	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	226, 308
FaiI	YATR	8 cut(s)	40, 50, 128, 146, 224, 279, 306, 336
FatI	CATG	2 cut(s)	222, 304
FauI	CCCGC	1 cut(s)	38
FblI	GTMKAC	3 cut(s)	93, 138, 204
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	20, 303
HapII	CCGG	3 cut(s)	21, 34, 192
Hin1II	CATG	2 cut(s)	226, 308
HincII	GTYRAC	2 cut(s)	139, 205
HindII	GTYRAC	2 cut(s)	139, 205
HpaII	CCGG	3 cut(s)	21, 34, 192
HphI	GGTGA	2 cut(s)	115, 181
Hpy166II	GTNNAC	3 cut(s)	94, 139, 205
Hpy188I	TCNGA	3 cut(s)	162, 246, 345
Hpy8I	GTNNAC	3 cut(s)	94, 139, 205
Hpy99I	CGWCG	2 cut(s)	140, 236
HpyCH4V	TGCA	2 cut(s)	293, 338
HpyF3I	CTNAG	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	226, 308
KroI	GCCGGC	1 cut(s)	33
KroNI	GCCGGC	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	162
LpnPI	CCDG	6 cut(s)	34, 47, 75, 125, 205, 271
Lsp1109I	GCAGC	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	2 cut(s)	36, 208
MhlI	GDGCHC	1 cut(s)	62
MnlI	CCTC	6 cut(s)	10, 58, 88, 131, 197, 293
MroNI	GCCGGC	1 cut(s)	33
MspI	CCGG	3 cut(s)	21, 34, 192
NaeI	GCCGGC	1 cut(s)	35
NdeII	GATC	1 cut(s)	162
NgoMIV	GCCGGC	1 cut(s)	33
NlaIII	CATG	2 cut(s)	226, 308
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdiI	GCCGGC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	340
PspPI	GGNCC	3 cut(s)	23, 67, 154
Rsr2I	CGGWCCG	1 cut(s)	23
RsrII	CGGWCCG	1 cut(s)	23
SalI	GTCGAC	2 cut(s)	137, 203
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	3 cut(s)	23, 67, 154
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	5 cut(s)	69, 117, 269, 317, 343
SinI	GGWCC	3 cut(s)	23, 67, 154
SsiI	CCGC	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	319
TaqI	TCGA	3 cut(s)	138, 204, 210
TaqII	GACCGA	1 cut(s)	40
TscAI	CASTG	1 cut(s)	365
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	17, 250
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	365
VpaK11BI	GGWCC	3 cut(s)	23, 67, 154
XmiI	GTMKAC	3 cut(s)	93, 138, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.