RLG00000035116

Belongs to the BI1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
61148769 .. 61149718
950 bp
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UTR
Exon/CDS
Intron
RLM00000035116

Sequence Viewer

Length: 414 bp
ATGAAAGCTAGTTCACATTGTTCAGTGGATATACCGACGGCCTTATCAGAGTTTGGGGAATTGGCCGCTTCTACAAAACTGCTTACCCAGATATCTGGGAATTGGCCGCCATCGGAGTTCTCCTCCCGCTCCCTCTCCCTCTCCCTCTCCGTCGTCTTTGTAAACTCCAACAACGTACAGCAGGCCAGACCGACCCACCGGCTATACCAGTCTATGGTTGAGAGCCTAGACCTCCGTTGGGCCTCCATTAGCAAAGTCTACGCCATCCTTACTGTTCAGCTACTCCTCACCGTAGTCGTCGCCGACACCATGGATTTGGTCCATCTGATTGCCCACTTCCTTTTCAAAACCCTTGCCGGCTTCGATGTCGACATCGCTGTCTTCATCATGGCACTCGCCGTGTTAGTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

14.94

Weight (kDa)

6.01

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030284)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0056651
rosa_laevigata RLG00000035116

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AccB7I CCANNNNNTGG 1 cut(s) 214
AccBSI CCGCTC 1 cut(s) 129
AccI GTMKAC 2 cut(s) 258, 369
AciI CCGC 3 cut(s) 66, 107, 127
AcoI YGGCCR 2 cut(s) 63, 104
AfaI GTAC 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 214, 238
AgsI TTSAA 1 cut(s) 346
AluBI AGCT 2 cut(s) 8, 280
AluI AGCT 2 cut(s) 8, 280
AoxI GGCC 5 cut(s) 39, 63, 104, 183, 240
AspS9I GGNCC 2 cut(s) 240, 319
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 373
BccI CCATC 3 cut(s) 118, 272, 330
BceAI ACGGC 2 cut(s) 54, 383
BfaI CTAG 2 cut(s) 9, 227
BisI GCNGC 2 cut(s) 66, 107
BlsI GCNGC 2 cut(s) 67, 108
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 240, 319
BpiI GAAGAC 1 cut(s) 373
BplI GAGNNNNNCTC 2 cut(s) 107, 139
BsaJI CCNNGG 1 cut(s) 309
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 238
Bse118I RCCGGY 2 cut(s) 198, 356
Bse1I ACTGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 214, 238
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 2 cut(s) 112, 275
BshFI GGCC 5 cut(s) 41, 65, 106, 185, 242
BsiSI CCGG 2 cut(s) 199, 357
BslI CCNNNNNNNGG 2 cut(s) 214, 238
BsnI GGCC 5 cut(s) 41, 65, 106, 185, 242
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 3 cut(s) 66, 107, 127
BspANI GGCC 5 cut(s) 41, 65, 106, 185, 242
BsrBI CCGCTC 1 cut(s) 129
BsrFI RCCGGY 2 cut(s) 198, 356
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 2 cut(s) 198, 356
BssECI CCNNGG 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 309
Bst4CI ACNGT 2 cut(s) 274, 292
BstC8I GCNNGC 2 cut(s) 183, 358
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 373
BstXI CCANNNNNNTGG 2 cut(s) 95, 316
BsuRI GGCC 5 cut(s) 41, 65, 106, 185, 242
BtgI CCRYGG 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 358
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 183, 358
Cfr10I RCCGGY 2 cut(s) 198, 356
Cfr13I GGNCC 2 cut(s) 240, 319
Csp6I GTAC 1 cut(s) 176
CviAII CATG 2 cut(s) 310, 388
CviQI GTAC 1 cut(s) 176
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 2 cut(s) 63, 104
Eco130I CCWWGG 1 cut(s) 309
Eco32I GATATC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 319
EcoRV GATATC 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 2 cut(s) 313, 391
FaiI YATR 5 cut(s) 32, 205, 215, 311, 389
FatI CATG 2 cut(s) 309, 387
FauI CCCGC 1 cut(s) 134
FblI GTMKAC 2 cut(s) 258, 369
Fnu4HI GCNGC 2 cut(s) 66, 107
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 2 cut(s) 66, 107
FspBI CTAG 2 cut(s) 9, 227
GluI GCNGC 2 cut(s) 66, 107
HaeIII GGCC 5 cut(s) 41, 65, 106, 185, 242
HapII CCGG 2 cut(s) 199, 357
Hin1II CATG 2 cut(s) 313, 391
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HpaII CCGG 2 cut(s) 199, 357
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 4 cut(s) 14, 163, 259, 370
Hpy188I TCNGA 3 cut(s) 49, 115, 327
Hpy8I GTNNAC 4 cut(s) 14, 163, 259, 370
Hpy99I CGWCG 3 cut(s) 40, 155, 302
HpyCH4III ACNGT 2 cut(s) 274, 292
HpyCH4IV ACGT 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 2 cut(s) 313, 391
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 7 cut(s) 81, 101, 167, 199, 212, 221, 370
MaeI CTAG 2 cut(s) 9, 227
MaeII ACGT 1 cut(s) 174
MbiI CCGCTC 1 cut(s) 129
MboII GAAGA 1 cut(s) 373
MluCI AATT 2 cut(s) 59, 100
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 7 cut(s) 133, 143, 149, 155, 242, 253, 296
MroNI GCCGGC 1 cut(s) 356
MspI CCGG 2 cut(s) 199, 357
NaeI GCCGGC 1 cut(s) 358
NcoI CCATGG 1 cut(s) 309
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 2 cut(s) 313, 391
PdiI GCCGGC 1 cut(s) 358
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 2 cut(s) 67, 108
PspPI GGNCC 2 cut(s) 240, 319
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SalI GTCGAC 1 cut(s) 368
SatI GCNGC 2 cut(s) 66, 107
Sau96I GGNCC 2 cut(s) 240, 319
SetI ASST 4 cut(s) 10, 177, 234, 282
SinI GGWCC 1 cut(s) 319
Sse9I AATT 2 cut(s) 59, 100
SsiI CCGC 3 cut(s) 66, 107, 127
SspMI CTAG 2 cut(s) 9, 227
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 274, 292
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 363, 369
TaqII GACCGA 1 cut(s) 205
TasI AATT 2 cut(s) 59, 100
TauI GCSGC 2 cut(s) 68, 109
TscAI CASTG 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 17, 373
TspGWI ACGGA 2 cut(s) 139, 224
TspRI CASTG 1 cut(s) 30
Van91I CCANNNNNTGG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 319
XmiI GTMKAC 2 cut(s) 258, 369
XspI CTAG 2 cut(s) 9, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.