RchiOBHm_Chr5g0057581

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0030131
Physical Location & Seq
Forward (+)
61522238 .. 61527504
5267 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
ATGACTCCACTGTCGACTGATTTCGTGGATCAATCTTTCTCCTATCTCCTAAATGGTTATCCATCAACAACCTATTATTATAGAGGCTATGATGGGACTGGCGACTGGGATGAGTACTGGGGATATATGAATCCAGAGGGAGTAGATATGACTTCTGTAAGGGTTTATGGAGATAACGGATCTCTTATGTACCACCATGGTTATGGGTATGCACTGTATAGGCCTTATTCACCAGCAGCTTCCCCTGCCTCGTCTATGGGAAATGATGGGCAGCATAGACCTGTAGCAAATACACCCATTACTTCTTCAAACTCGAATGGCAATAGAATTCCATCTTTGAGGAATCAAAACTACCGTCCAAATTCTCACTTCATGTTTGATACAATTGTAACAAACAACATATTTGGCGATATATTATCTGATGAGGCCTCAATGATTACTGGAAGTATTGGGATGCTTCCATCTACAAGTCTTGGAGAACCACTGCAATATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

165

Amino Acids

18.43

Weight (kDa)

4.6

Isoelectric Point (pI)

28.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 125 - 160 1.9e-14 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030131)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0057581
rosa_samantha Rh5CG411300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AccI GTMKAC 1 cut(s) 14
AclWI GGATC 2 cut(s) 36, 187
AcsI RAATTY 2 cut(s) 327, 361
AfaI GTAC 2 cut(s) 116, 191
AgsI TTSAA 1 cut(s) 309
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
AlwI GGATC 2 cut(s) 36, 187
AoxI GGCC 2 cut(s) 221, 426
ApeKI GCWGC 2 cut(s) 236, 271
ApoI RAATTY 2 cut(s) 327, 361
ArsI GACNNNNNNTTYG 2 cut(s) 340, 372
AsuHPI GGTGA 1 cut(s) 222
BaeI ACNNNNGTAYC 2 cut(s) 372, 405
BbvI GCAGC 2 cut(s) 248, 283
BccI CCATC 5 cut(s) 70, 86, 260, 340, 469
BfmI CTRYAG 1 cut(s) 282
BisI GCNGC 2 cut(s) 237, 272
BlsI GCNGC 2 cut(s) 238, 273
BmcAI AGTACT 1 cut(s) 116
BmrI ACTGGG 2 cut(s) 115, 127
BmsI GCATC 1 cut(s) 444
BmuI ACTGGG 2 cut(s) 115, 127
BsaJI CCNNGG 1 cut(s) 196
Bse1I ACTGG 4 cut(s) 103, 110, 122, 445
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 2 cut(s) 115, 459
BseNI ACTGG 4 cut(s) 103, 110, 122, 445
BseXI GCAGC 2 cut(s) 248, 283
BshFI GGCC 2 cut(s) 223, 428
BslFI GGGAC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 2 cut(s) 223, 428
Bsp143I GATC 2 cut(s) 28, 179
Bsp19I CCATGG 1 cut(s) 196
BspANI GGCC 2 cut(s) 223, 428
BspPI GGATC 2 cut(s) 36, 187
BsrI ACTGG 4 cut(s) 103, 110, 122, 445
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 2 cut(s) 28, 179
BssT1I CCWWGG 1 cut(s) 196
Bst4CI ACNGT 3 cut(s) 12, 216, 356
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 2 cut(s) 115, 459
BstKTI GATC 2 cut(s) 31, 182
BstMBI GATC 2 cut(s) 28, 179
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 248, 283
BstX2I RGATCY 1 cut(s) 179
BstXI CCANNNNNNTGG 1 cut(s) 203
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 2 cut(s) 223, 428
BtgI CCRYGG 1 cut(s) 196
BtsCI GGATG 2 cut(s) 115, 459
BtsI GCAGTG 1 cut(s) 482
BtsIMutI CAGTG 3 cut(s) 8, 212, 482
Csp6I GTAC 2 cut(s) 115, 190
CviAII CATG 2 cut(s) 197, 373
CviJI RGCY 4 cut(s) 87, 223, 239, 428
CviKI_1 RGCY 4 cut(s) 87, 223, 239, 428
CviQI GTAC 2 cut(s) 115, 190
DpnI GATC 2 cut(s) 30, 181
DpnII GATC 2 cut(s) 28, 179
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 196
Eco147I AGGCCT 2 cut(s) 223, 428
EcoRI GAATTC 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 2 cut(s) 200, 376
FaqI GGGAC 1 cut(s) 109
FatI CATG 2 cut(s) 196, 372
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 2 cut(s) 237, 272
FokI GGATG 2 cut(s) 122, 466
Fsp4HI GCNGC 2 cut(s) 237, 272
GluI GCNGC 2 cut(s) 237, 272
HaeIII GGCC 2 cut(s) 223, 428
Hin1II CATG 2 cut(s) 200, 376
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 3 cut(s) 4, 130, 343
HphI GGTGA 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 421
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 15
HpyCH4III ACNGT 3 cut(s) 12, 216, 356
HpyCH4V TGCA 2 cut(s) 212, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
Hsp92II CATG 2 cut(s) 200, 376
Kzo9I GATC 2 cut(s) 28, 179
LpnPI CCDG 8 cut(s) 84, 91, 103, 147, 246, 258, 294, 426
Lsp1109I GCAGC 2 cut(s) 248, 283
LweI GCATC 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 388
MalI GATC 2 cut(s) 30, 181
MboI GATC 2 cut(s) 28, 179
MboII GAAGA 1 cut(s) 297
MfeI CAATTG 1 cut(s) 384
MflI RGATCY 1 cut(s) 179
MluCI AATT 3 cut(s) 327, 361, 384
MnlI CCTC 6 cut(s) 77, 130, 259, 333, 418, 439
MslI CAYNNNNRTG 1 cut(s) 201
MunI CAATTG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 245
NcoI CCATGG 1 cut(s) 196
NdeII GATC 2 cut(s) 28, 179
NlaIII CATG 2 cut(s) 200, 376
PceI AGGCCT 2 cut(s) 223, 428
PfeI GAWTC 2 cut(s) 130, 343
PkrI GCNGC 2 cut(s) 238, 273
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 2 cut(s) 116, 191
RsaNI GTAC 2 cut(s) 115, 190
RseI CAYNNNNRTG 1 cut(s) 201
SalI GTCGAC 1 cut(s) 13
SatI GCNGC 2 cut(s) 237, 272
Sau3AI GATC 2 cut(s) 28, 179
ScaI AGTACT 1 cut(s) 116
SetI ASST 3 cut(s) 74, 241, 283
SfaNI GCATC 1 cut(s) 444
SfcI CTRYAG 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 3 cut(s) 327, 361, 384
SseBI AGGCCT 2 cut(s) 223, 428
SspI AATATT 1 cut(s) 491
StuI AGGCCT 2 cut(s) 223, 428
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 3 cut(s) 12, 216, 356
TaqI TCGA 2 cut(s) 14, 314
TasI AATT 3 cut(s) 327, 361, 384
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 2 cut(s) 130, 343
TscAI CASTG 3 cut(s) 15, 219, 489
TseI GCWGC 2 cut(s) 236, 271
TspDTI ATGAA 2 cut(s) 143, 361
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 3 cut(s) 15, 219, 489
XapI RAATTY 2 cut(s) 327, 361
XcmI CCANNNNNNNNNTGG 2 cut(s) 200, 489
XmiI GTMKAC 1 cut(s) 14
ZrmI AGTACT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.