Rh5CG411300

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0030131
Physical Location & Seq
Forward (+)
55552032 .. 55563624
11593 bp
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UTR
Exon/CDS
Intron
Rh5CG411300.1

Sequence Viewer

Length: 312 bp
ATGTACCACCATGGTTATGGGTATGCACTGTATAGGCCTTATTCACCAGCAGCTTCCCCTGCCTCGTCTATGGGAAATGATGGGCAGCATAGACCTGTAGCAAATACACCCATTACTTCTTCAAACTCGAATGGCAATAGAATTCCATCTTTGAGGAATCAAAACTACCGTCCAAATTCTCACTTCATGTTTGATACAATTGTAACAAACAACATATTTGGCGATATATTATCTGATGAGGCCTCAATGATTACTGGAAGTATTGGGATGCTTCCATCTACAAGTCTTGGAGAACCACTGCAATATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

103

Amino Acids

11.33

Weight (kDa)

6.37

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 63 - 98 7.3e-15 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030131)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0057581
rosa_samantha Rh5CG411300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 141, 175
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 123
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AoxI GGCC 2 cut(s) 35, 240
ApeKI GCWGC 2 cut(s) 50, 85
ApoI RAATTY 2 cut(s) 141, 175
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
AsuHPI GGTGA 1 cut(s) 36
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BbvI GCAGC 2 cut(s) 62, 97
BccI CCATC 3 cut(s) 74, 154, 283
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 2 cut(s) 51, 86
BlsI GCNGC 2 cut(s) 52, 87
BmsI GCATC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 2 cut(s) 62, 97
BshFI GGCC 2 cut(s) 37, 242
BsnI GGCC 2 cut(s) 37, 242
Bsp19I CCATGG 1 cut(s) 10
BspANI GGCC 2 cut(s) 37, 242
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 30, 170
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 62, 97
BstXI CCANNNNNNTGG 1 cut(s) 17
BsuRI GGCC 2 cut(s) 37, 242
BtgI CCRYGG 1 cut(s) 10
BtsCI GGATG 1 cut(s) 273
BtsI GCAGTG 1 cut(s) 296
BtsIMutI CAGTG 2 cut(s) 26, 296
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 11, 187
CviJI RGCY 3 cut(s) 37, 53, 242
CviKI_1 RGCY 3 cut(s) 37, 53, 242
CviQI GTAC 1 cut(s) 4
Eco130I CCWWGG 1 cut(s) 10
Eco147I AGGCCT 2 cut(s) 37, 242
EcoRI GAATTC 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 2 cut(s) 14, 190
FaiI YATR 9 cut(s) 12, 18, 24, 33, 71, 90, 188, 215, 227
FatI CATG 2 cut(s) 10, 186
Fnu4HI GCNGC 2 cut(s) 51, 86
FokI GGATG 1 cut(s) 280
Fsp4HI GCNGC 2 cut(s) 51, 86
GluI GCNGC 2 cut(s) 51, 86
HaeIII GGCC 2 cut(s) 37, 242
Hin1II CATG 2 cut(s) 14, 190
HinfI GANTC 1 cut(s) 157
HphI GGTGA 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 30, 170
HpyCH4V TGCA 2 cut(s) 26, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
Hsp92II CATG 2 cut(s) 14, 190
LpnPI CCDG 4 cut(s) 60, 72, 108, 240
Lsp1109I GCAGC 2 cut(s) 62, 97
LweI GCATC 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 202
MboII GAAGA 1 cut(s) 111
MfeI CAATTG 1 cut(s) 198
MluCI AATT 3 cut(s) 141, 175, 198
MnlI CCTC 4 cut(s) 73, 147, 232, 253
MslI CAYNNNNRTG 1 cut(s) 15
MunI CAATTG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 59
NcoI CCATGG 1 cut(s) 10
NlaIII CATG 2 cut(s) 14, 190
PceI AGGCCT 2 cut(s) 37, 242
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 2 cut(s) 52, 87
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 15
SatI GCNGC 2 cut(s) 51, 86
SetI ASST 2 cut(s) 55, 97
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 3 cut(s) 141, 175, 198
SseBI AGGCCT 2 cut(s) 37, 242
SspI AATATT 1 cut(s) 305
StuI AGGCCT 2 cut(s) 37, 242
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 30, 170
TaqI TCGA 1 cut(s) 128
TasI AATT 3 cut(s) 141, 175, 198
TfiI GAWTC 1 cut(s) 157
TscAI CASTG 2 cut(s) 33, 303
TseI GCWGC 2 cut(s) 50, 85
TspDTI ATGAA 1 cut(s) 175
TspRI CASTG 2 cut(s) 33, 303
XapI RAATTY 2 cut(s) 141, 175
XcmI CCANNNNNNNNNTGG 2 cut(s) 14, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.