Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030261

Physical Location & Seq

Genomic Coordinates Forward (+)

65070969 .. 65073448

Gene Structure 2480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTTAGTTAAGCTTAATTCCACAACTTTTTCCTATTTCTTTTTCGTTTGTTTCTTTGCAGAAGCATTTGATCCACTTGATCCCTCTGGAAATATCACTATCAGATGGGATGTCATGGGCTTCACTACTGATGGCTATGAGTTAAGTACCAATTCAATAACGATATGCATTGATGGTAAAGATGCTCTTGTTACAATTTACAACTTCCAGAAATATCGTCGCATTCAATCACCAGGTTGGTCATTGAGATGGACATGGGGAAAGAATGAGATTATAAGGTGCATGCTGGGAGCACAAGCCACAGAGAAAGGAAATTGTTCGAGCTTTAAAGCAACTTTCCCACATTCTTGTGAAAAGACCCCAATGATCTTCAACTCATTGCCATCGACTCCTTACAACCAGCAAATTGGAACTTGTGGCAAATGGGGAGGGCTGGTCGAATGTTCATGGTTACTTGATCCTGCCTATTTATGGATGCAGGATCGAGTCAATTCAGTAGTGCGTTTTCAGGTTACTGTTGGTCAAGCAGGAACTAATAACCGAACTAACAAGCTTCCTTACAACTTCACCTTGAGTGCACCGGGGCCTGGGTATATTTGTGGCCCTGCAAAGATAGTTAAACACACTATATTTCCTACTCCAGGTGGAAGGAGAATAACTCAAGCTATCATGACATGGGAAGTTAGATGTACATATTCACAAGTCTTGGCACGGAAGGTTCCCACCTGTTGTGTCTCACTGTCTTCTTTCTACAATAACACAAGCGTGCCCTGCAATACATGTTCATGTGGCTGCCAAAACAACACCAGCAAATGCGTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009505 GO:0009628 GO:0009651 GO:0009664 GO:0009825 GO:0009832 GO:0009897 GO:0009930 GO:0009986 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030198 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0040007 GO:0042546 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

274

Amino Acids

30.66

Weight (kDa)

8.84

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	62 - 233	4.5e-49	COBRA-like protein
COB_C	PF25079	242 - 272	1.2e-07	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030261)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0059971
rosa_wichuraiana	Rw5G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AclWI	GGATC	4 cut(s)	65, 74, 452, 489
AfaI	GTAC	2 cut(s)	148, 691
AfiI	CCNNNNNNNGG	3 cut(s)	471, 587, 641
AflIII	ACRYGT	1 cut(s)	779
AgsI	TTSAA	3 cut(s)	156, 227, 373
AjnI	CCWGG	3 cut(s)	232, 586, 640
AleI	CACNNNNGTG	1 cut(s)	764
AluBI	AGCT	4 cut(s)	13, 324, 553, 665
AluI	AGCT	4 cut(s)	13, 324, 553, 665
Alw21I	GWGCWC	2 cut(s)	295, 580
Alw26I	GTCTC	1 cut(s)	739
Alw44I	GTGCAC	1 cut(s)	576
AlwI	GGATC	4 cut(s)	65, 74, 452, 489
AoxI	GGCC	2 cut(s)	584, 601
ApaLI	GTGCAC	1 cut(s)	576
ApeKI	GCWGC	1 cut(s)	792
Asp700I	GAANNNNTTC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	584, 602
AsuC2I	CCSGG	1 cut(s)	582
AsuHPI	GGTGA	2 cut(s)	222, 559
BaeGI	GKGCMC	2 cut(s)	580, 771
BbsI	GAAGAC	1 cut(s)	735
Bbv12I	GWGCWC	2 cut(s)	295, 580
BbvI	GCAGC	1 cut(s)	779
BccI	CCATC	5 cut(s)	99, 125, 167, 243, 391
BciT130I	CCWGG	3 cut(s)	234, 588, 642
BcnI	CCSGG	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	739
BisI	GCNGC	1 cut(s)	793
BlsI	GCNGC	1 cut(s)	794
Bme1390I	CCNGG	4 cut(s)	234, 582, 588, 642
BmgT120I	GGNCC	2 cut(s)	584, 602
BmiI	GGNNCC	2 cut(s)	585, 720
BmrFI	CCNGG	4 cut(s)	234, 582, 588, 642
BmsI	GCATC	2 cut(s)	172, 465
BpiI	GAAGAC	1 cut(s)	735
BplI	GAGNNNNNCTC	2 cut(s)	643, 675
BpmI	CTGGAG	1 cut(s)	624
BpuEI	CTTGAG	2 cut(s)	592, 645
BpuMI	CCSGG	1 cut(s)	582
BsaJI	CCNNGG	2 cut(s)	581, 587
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	3 cut(s)	471, 587, 641
Bse3DI	GCAATG	1 cut(s)	377
BseBI	CCWGG	3 cut(s)	234, 588, 642
BseDI	CCNNGG	2 cut(s)	581, 587
BseGI	GGATG	2 cut(s)	115, 480
BseLI	CCNNNNNNNGG	3 cut(s)	471, 587, 641
BseMI	GCAATG	1 cut(s)	377
BseSI	GKGCMC	2 cut(s)	580, 771
BseXI	GCAGC	1 cut(s)	779
BseYI	CCCAGC	1 cut(s)	286
BshFI	GGCC	2 cut(s)	586, 603
BsiHKAI	GWGCWC	2 cut(s)	295, 580
BsiSI	CCGG	1 cut(s)	581
BslI	CCNNNNNNNGG	3 cut(s)	471, 587, 641
BsmAI	GTCTC	1 cut(s)	739
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	586, 603
Bsp1286I	GDGCHC	3 cut(s)	295, 580, 771
Bsp1407I	TGTACA	1 cut(s)	689
Bsp143I	GATC	5 cut(s)	70, 79, 366, 457, 481
BspANI	GGCC	2 cut(s)	586, 603
BspHI	TCATGA	1 cut(s)	669
BspLI	GGNNCC	2 cut(s)	585, 720
BspPI	GGATC	4 cut(s)	65, 74, 452, 489
BsrDI	GCAATG	1 cut(s)	377
BsrGI	TGTACA	1 cut(s)	689
BssECI	CCNNGG	2 cut(s)	581, 587
BssMI	GATC	5 cut(s)	70, 79, 366, 457, 481
Bst2UI	CCWGG	3 cut(s)	234, 588, 642
Bst4CI	ACNGT	2 cut(s)	517, 741
BstAUI	TGTACA	1 cut(s)	689
BstC8I	GCNNGC	2 cut(s)	284, 767
BstENI	CCTNNNNNAGG	1 cut(s)	639
BstF5I	GGATG	2 cut(s)	115, 480
BstKTI	GATC	5 cut(s)	73, 82, 369, 460, 484
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	5 cut(s)	70, 79, 366, 457, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	771
BstNI	CCWGG	3 cut(s)	234, 588, 642
BstNSI	RCATGY	2 cut(s)	286, 783
BstSCI	CCNGG	4 cut(s)	232, 580, 586, 640
BstSLI	GKGCMC	2 cut(s)	580, 771
BstV1I	GCAGC	1 cut(s)	779
BstV2I	GAAGAC	1 cut(s)	735
BstXI	CCANNNNNNTGG	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	586, 603
BtsCI	GGATG	2 cut(s)	115, 480
BtsIMutI	CAGTG	1 cut(s)	737
Cac8I	GCNNGC	2 cut(s)	284, 767
CciI	TCATGA	1 cut(s)	669
Cfr13I	GGNCC	2 cut(s)	584, 602
CsiI	ACCWGGT	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	147, 690
CviAII	CATG	8 cut(s)	115, 255, 283, 447, 670, 675, 780, 786
CviQI	GTAC	2 cut(s)	147, 690
DpnI	GATC	5 cut(s)	72, 81, 368, 459, 483
DpnII	GATC	5 cut(s)	70, 79, 366, 457, 481
DraI	TTTAAA	1 cut(s)	328
EcoNI	CCTNNNNNAGG	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	232, 586, 640
EcoT22I	ATGCAT	1 cut(s)	170
FaeI	CATG	8 cut(s)	118, 258, 286, 450, 673, 678, 783, 789
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	8 cut(s)	114, 254, 282, 446, 669, 674, 779, 785
Fnu4HI	GCNGC	1 cut(s)	793
FokI	GGATG	2 cut(s)	122, 487
Fsp4HI	GCNGC	1 cut(s)	793
GluI	GCNGC	1 cut(s)	793
GsaI	CCCAGC	1 cut(s)	290
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	2 cut(s)	586, 603
HapII	CCGG	1 cut(s)	581
Hin1II	CATG	8 cut(s)	118, 258, 286, 450, 673, 678, 783, 789
HindIII	AAGCTT	2 cut(s)	11, 551
HinfI	GANTC	2 cut(s)	388, 486
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	2 cut(s)	222, 559
Hpy166II	GTNNAC	1 cut(s)	578
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	3 cut(s)	87, 208, 670
Hpy8I	GTNNAC	1 cut(s)	578
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	2 cut(s)	642, 709
HpyCH4III	ACNGT	2 cut(s)	517, 741
HpyCH4V	TGCA	7 cut(s)	59, 168, 282, 478, 578, 608, 774
HpyF10VI	GCNNNNNNNGC	1 cut(s)	771
Hsp92II	CATG	8 cut(s)	118, 258, 286, 450, 673, 678, 783, 789
Kzo9I	GATC	5 cut(s)	70, 79, 366, 457, 481
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	1 cut(s)	779
LweI	GCATC	2 cut(s)	172, 465
MabI	ACCWGGT	1 cut(s)	232
MaeIII	GTNAC	3 cut(s)	190, 450, 511
MalI	GATC	5 cut(s)	72, 81, 368, 459, 483
MboI	GATC	5 cut(s)	70, 79, 366, 457, 481
MboII	GAAGA	2 cut(s)	361, 735
MhlI	GDGCHC	3 cut(s)	295, 580, 771
MluCI	AATT	6 cut(s)	16, 151, 195, 313, 405, 490
MlyI	GAGTC	2 cut(s)	382, 495
MnlI	CCTC	2 cut(s)	94, 422
Mph1103I	ATGCAT	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	5 cut(s)	9, 15, 143, 327, 618
MslI	CAYNNNNRTG	4 cut(s)	247, 348, 764, 784
MspI	CCGG	1 cut(s)	581
MspR9I	CCNGG	4 cut(s)	234, 582, 588, 642
Mva1269I	GAATGC	1 cut(s)	222
MvaI	CCWGG	3 cut(s)	234, 588, 642
MwoI	GCNNNNNNNGC	1 cut(s)	771
NciI	CCSGG	1 cut(s)	582
NdeII	GATC	5 cut(s)	70, 79, 366, 457, 481
NlaIII	CATG	8 cut(s)	118, 258, 286, 450, 673, 678, 783, 789
NlaIV	GGNNCC	2 cut(s)	585, 720
NsiI	ATGCAT	1 cut(s)	170
NspI	RCATGY	2 cut(s)	286, 783
OliI	CACNNNNGTG	1 cut(s)	764
PaeI	GCATGC	1 cut(s)	286
PagI	TCATGA	1 cut(s)	669
PciI	ACATGT	1 cut(s)	779
PctI	GAATGC	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	794
PleI	GAGTC	2 cut(s)	382, 494
PpsI	GAGTC	2 cut(s)	382, 494
PscI	ACATGT	1 cut(s)	779
PsiI	TTATAA	1 cut(s)	275
Psp6I	CCWGG	3 cut(s)	232, 586, 640
PspFI	CCCAGC	1 cut(s)	286
PspGI	CCWGG	3 cut(s)	232, 586, 640
PspN4I	GGNNCC	2 cut(s)	585, 720
PspPI	GGNCC	2 cut(s)	584, 602
RsaI	GTAC	2 cut(s)	148, 691
RsaNI	GTAC	2 cut(s)	147, 690
RseI	CAYNNNNRTG	4 cut(s)	247, 348, 764, 784
SaqAI	TTAA	5 cut(s)	9, 15, 143, 327, 618
SatI	GCNGC	1 cut(s)	793
Sau3AI	GATC	5 cut(s)	70, 79, 366, 457, 481
Sau96I	GGNCC	2 cut(s)	584, 602
SchI	GAGTC	2 cut(s)	382, 495
ScrFI	CCNGG	4 cut(s)	234, 582, 588, 642
SduI	GDGCHC	3 cut(s)	295, 580, 771
SexAI	ACCWGGT	1 cut(s)	232
SfaNI	GCATC	2 cut(s)	172, 465
SmiMI	CAYNNNNRTG	4 cut(s)	247, 348, 764, 784
SmlI	CTYRAG	2 cut(s)	571, 660
SmoI	CTYRAG	2 cut(s)	571, 660
SphI	GCATGC	1 cut(s)	286
Sse9I	AATT	6 cut(s)	16, 151, 195, 313, 405, 490
StyD4I	CCNGG	4 cut(s)	232, 580, 586, 640
TaaI	ACNGT	2 cut(s)	517, 741
TaqI	TCGA	4 cut(s)	320, 386, 438, 484
TasI	AATT	6 cut(s)	16, 151, 195, 313, 405, 490
TatI	WGTACW	1 cut(s)	689
Tru1I	TTAA	5 cut(s)	9, 15, 143, 327, 618
Tru9I	TTAA	5 cut(s)	9, 15, 143, 327, 618
TscAI	CASTG	1 cut(s)	744
TseI	GCWGC	1 cut(s)	792
TspDTI	ATGAA	2 cut(s)	435, 774
TspGWI	ACGGA	1 cut(s)	727
TspRI	CASTG	1 cut(s)	744
VneI	GTGCAC	1 cut(s)	576
XagI	CCTNNNNNAGG	1 cut(s)	639
XceI	RCATGY	2 cut(s)	286, 783
XmnI	GAANNNNTTC	1 cut(s)	316
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.