Rw5G036840

COBRA-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0030261
Physical Location & Seq
Forward (+)
64711058 .. 64715022
3965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G036840.1

Sequence Viewer

Length: 1305 bp
ATGGGATTCCTGTTCTTTCCAAACGTTAGATCCGTCTCCAGTTTAACCTGTTTCACTATATTGCTGCTTCTATGTGGACTTTCTTTCACTTGCTTCACGTCAACAGAAGCATTTGATCCACTTGATCCCTCTGGAAATATCACGATCAGATGGGATGTCATGGGCTTCACTACTGATGGCTATGAGTTAAGTACGAATTCAATATCAATATGCATTGATGGTAAAGATGCTCTTGTTACAATTTACAACTTCCAGAAATATCGTCGCATTCAATCACCAGGTTGGTCATTGAGATGGACATGGGGAAAGAATGAGATTATAAGGTGCATGCTGGGAGCACAAGCCACAGAGAAAGGAAACTGTTCGAGCTTTAAAGCAACTTCCCCACATTCTTGTGAAAAGACCCCAATGATCGTCAACTCATTGCCATCGACTCCTTACAACCAGCAAATTGGAACTTGTGGCAAATGGGGAGGGCTGGTCGAATGTTCATGGTTACTTGATCCTGCCTATTTATGGATGCAGGATCGAGCCAATTCGGTAGCGCGTTTTCAGGTTACTGTTGGTCAAGCAGGAACTAATAACCGAACTACCACGCTTCCTTACAACTTCACCCTGAATGCACCGGGGCCTGGGTATATTTGTGGCCCTGCAAAGATAGTTAAACACACTATATTTCCTACTCCAGGTGGAAGGAGAATAACTCAAGCTATCATGATATGGGAAGTTAGATGTACATATTCACAATTCTTGGCACGGAAGGTTCCCACCTGTTGTGTCTCACTGTCTTCTTTCTACAATAACACAAGCGTGCCCTGCAATACATGTTCATGTGGCTGCCAAAACAACACCAGCAAATGCGTAGAGCTGCATTCGTCTTCATTTGTCCCAAACTCAGACAAGACCTATGCGCCTTTTGTTCAATGTACGAGCCATATGTGCCCCATCCAAATTAGTTGGCAGGTAAAGGAAAACCACAAGCAATACTGGCTAGTGAACCTCAAAATTACAAACTTCAATAACAGGATGAGCTATAAAGATTGGAACCTAATCTTTAGATTCAACTACAAGTCAGTGACTCGTTATGCAGGAACAAATGATACTGCAATGCTATGGGGGATTAAGTTCTATAATGATATACTGATGCAAGCTGGGCATCTTGGTAGTGTCGAGTCGGAGCTCCTTTTCCTTAAGGATGGATCTAATTTTACTTCACATAAGGGTTGGGCGTTCTCTCAAAGAGTCTATTTCAATGGTGATTACTGTGGCATGCCACCCCCAGATGCGTATCCGTCGGTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

434

Amino Acids

48.84

Weight (kDa)

8.78

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 77 - 248 1.1e-49 COBRA-like protein
COB_C PF25079 257 - 300 2.9e-09 COBRA family C-terminal domain
COB_C PF25079 305 - 431 1.3e-22 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030261)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0059971
rosa_wichuraiana Rw5G036840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
Acc36I ACCTGC 1 cut(s) 952
AccII CGCG 1 cut(s) 547
AclI AACGTT 1 cut(s) 24
AclWI GGATC 6 cut(s) 24, 110, 119, 497, 534, 1207
AcsI RAATTY 1 cut(s) 196
AfaI GTAC 3 cut(s) 193, 736, 928
AfiI CCNNNNNNNGG 3 cut(s) 516, 632, 686
AflII CTTAAG 1 cut(s) 1190
AflIII ACRYGT 1 cut(s) 824
AgsI TTSAA 6 cut(s) 201, 272, 923, 1018, 1063, 1252
AjiI CACGTC 1 cut(s) 99
AjnI CCWGG 3 cut(s) 277, 631, 685
AleI CACNNNNGTG 1 cut(s) 809
AluBI AGCT 6 cut(s) 369, 710, 868, 1032, 1151, 1180
AluI AGCT 6 cut(s) 369, 710, 868, 1032, 1151, 1180
Alw21I GWGCWC 2 cut(s) 340, 1182
Alw26I GTCTC 2 cut(s) 40, 784
AlwI GGATC 6 cut(s) 24, 110, 119, 497, 534, 1207
AoxI GGCC 2 cut(s) 629, 646
ApeKI GCWGC 3 cut(s) 64, 837, 868
ApoI RAATTY 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 361
AspLEI GCGC 2 cut(s) 547, 913
AspS9I GGNCC 2 cut(s) 629, 647
AsuC2I CCSGG 1 cut(s) 627
AsuHPI GGTGA 3 cut(s) 267, 604, 1268
BaeGI GKGCMC 2 cut(s) 816, 944
BanII GRGCYC 1 cut(s) 1182
BbsI GAAGAC 2 cut(s) 780, 870
Bbv12I GWGCWC 2 cut(s) 340, 1182
BbvI GCAGC 3 cut(s) 51, 824, 855
BccI CCATC 7 cut(s) 144, 170, 212, 288, 436, 953, 1190
BciT130I CCWGG 3 cut(s) 279, 633, 687
BciVI GTATCC 1 cut(s) 1299
BcnI CCSGG 1 cut(s) 627
BcoDI GTCTC 2 cut(s) 40, 784
BfaI CTAG 1 cut(s) 992
BfrI CTTAAG 1 cut(s) 1190
BfuAI ACCTGC 1 cut(s) 952
BfuI GTATCC 1 cut(s) 1299
BisI GCNGC 3 cut(s) 65, 838, 869
BlsI GCNGC 3 cut(s) 66, 839, 870
Bme1390I CCNGG 4 cut(s) 279, 627, 633, 687
BmgBI CACGTC 1 cut(s) 99
BmgT120I GGNCC 2 cut(s) 629, 647
BmiI GGNNCC 3 cut(s) 630, 765, 1046
BmrFI CCNGG 4 cut(s) 279, 627, 633, 687
BmsI GCATC 5 cut(s) 217, 510, 1134, 1165, 1273
BpiI GAAGAC 2 cut(s) 780, 870
BplI GAGNNNNNCTC 2 cut(s) 688, 720
BpmI CTGGAG 2 cut(s) 22, 669
BpuEI CTTGAG 1 cut(s) 690
BpuMI CCSGG 1 cut(s) 627
BsaBI GATNNNNATC 1 cut(s) 1287
BsaJI CCNNGG 2 cut(s) 626, 632
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 3 cut(s) 516, 632, 686
Bse1I ACTGG 2 cut(s) 39, 992
Bse3DI GCAATG 2 cut(s) 422, 1113
Bse8I GATNNNNATC 1 cut(s) 1287
BseBI CCWGG 3 cut(s) 279, 633, 687
BseDI CCNNGG 2 cut(s) 626, 632
BseGI GGATG 5 cut(s) 160, 525, 945, 1032, 1201
BseJI GATNNNNATC 1 cut(s) 1287
BseLI CCNNNNNNNGG 3 cut(s) 516, 632, 686
BseMI GCAATG 2 cut(s) 422, 1113
BseMII CTCAG 1 cut(s) 909
BseNI ACTGG 2 cut(s) 39, 992
BseSI GKGCMC 2 cut(s) 816, 944
BseXI GCAGC 3 cut(s) 51, 824, 855
BseYI CCCAGC 2 cut(s) 331, 1151
Bsh1236I CGCG 1 cut(s) 547
BshFI GGCC 2 cut(s) 631, 648
BsiHKAI GWGCWC 2 cut(s) 340, 1182
BsiSI CCGG 1 cut(s) 626
BslFI GGGAC 1 cut(s) 872
BslI CCNNNNNNNGG 3 cut(s) 516, 632, 686
BsmAI GTCTC 2 cut(s) 40, 784
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 872
BsmI GAATGC 3 cut(s) 267, 625, 871
BsnI GGCC 2 cut(s) 631, 648
Bsp1286I GDGCHC 4 cut(s) 340, 816, 944, 1182
Bsp1407I TGTACA 1 cut(s) 734
Bsp143I GATC 8 cut(s) 29, 115, 124, 144, 411, 502, 526, 1199
BspANI GGCC 2 cut(s) 631, 648
BspCNI CTCAG 1 cut(s) 908
BspFNI CGCG 1 cut(s) 547
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 3 cut(s) 630, 765, 1046
BspMI ACCTGC 1 cut(s) 952
BspPI GGATC 6 cut(s) 24, 110, 119, 497, 534, 1207
BspTI CTTAAG 1 cut(s) 1190
BsrDI GCAATG 2 cut(s) 422, 1113
BsrGI TGTACA 1 cut(s) 734
BsrI ACTGG 2 cut(s) 39, 992
BssECI CCNNGG 2 cut(s) 626, 632
BssMI GATC 8 cut(s) 29, 115, 124, 144, 411, 502, 526, 1199
Bst2UI CCWGG 3 cut(s) 279, 633, 687
Bst4CI ACNGT 4 cut(s) 362, 562, 786, 1265
BstAFI CTTAAG 1 cut(s) 1190
BstAUI TGTACA 1 cut(s) 734
BstC8I GCNNGC 4 cut(s) 329, 812, 1149, 1271
BstDEI CTNAG 1 cut(s) 895
BstENI CCTNNNNNAGG 1 cut(s) 684
BstF5I GGATG 5 cut(s) 160, 525, 945, 1032, 1201
BstFNI CGCG 1 cut(s) 547
BstHHI GCGC 2 cut(s) 547, 913
BstKTI GATC 8 cut(s) 32, 118, 127, 147, 414, 505, 529, 1202
BstMAI GTCTC 2 cut(s) 40, 784
BstMBI GATC 8 cut(s) 29, 115, 124, 144, 411, 502, 526, 1199
BstMWI GCNNNNNNNGC 4 cut(s) 816, 939, 988, 1153
BstNI CCWGG 3 cut(s) 279, 633, 687
BstNSI RCATGY 3 cut(s) 331, 828, 1273
BstSCI CCNGG 4 cut(s) 277, 625, 631, 685
BstSLI GKGCMC 2 cut(s) 816, 944
BstUI CGCG 1 cut(s) 547
BstV1I GCAGC 3 cut(s) 51, 824, 855
BstV2I GAAGAC 2 cut(s) 780, 870
BstX2I RGATCY 2 cut(s) 29, 1199
BstXI CCANNNNNNTGG 1 cut(s) 452
BstYI RGATCY 2 cut(s) 29, 1199
BsuI GTATCC 1 cut(s) 1299
BsuRI GGCC 2 cut(s) 631, 648
BtrI CACGTC 1 cut(s) 99
BtsCI GGATG 5 cut(s) 160, 525, 945, 1032, 1201
BtsIMutI CAGTG 2 cut(s) 782, 1080
BveI ACCTGC 1 cut(s) 952
Cac8I GCNNGC 4 cut(s) 329, 812, 1149, 1271
CciI TCATGA 1 cut(s) 714
CfoI GCGC 2 cut(s) 547, 913
Cfr13I GGNCC 2 cut(s) 629, 647
CsiI ACCWGGT 1 cut(s) 277
Csp6I GTAC 3 cut(s) 192, 735, 927
CviAII CATG 8 cut(s) 160, 300, 328, 492, 715, 825, 831, 1270
CviQI GTAC 3 cut(s) 192, 735, 927
DdeI CTNAG 1 cut(s) 895
DpnI GATC 8 cut(s) 31, 117, 126, 146, 413, 504, 528, 1201
DpnII GATC 8 cut(s) 29, 115, 124, 144, 411, 502, 526, 1199
DraI TTTAAA 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 1180
Eco24I GRGCYC 1 cut(s) 1182
Eco53kI GAGCTC 1 cut(s) 1180
EcoICRI GAGCTC 1 cut(s) 1180
EcoNI CCTNNNNNAGG 1 cut(s) 684
EcoO109I RGGNCCY 1 cut(s) 629
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 3 cut(s) 277, 631, 685
EcoT22I ATGCAT 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 1182
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 8 cut(s) 163, 303, 331, 495, 718, 828, 834, 1273
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 872
FatI CATG 8 cut(s) 159, 299, 327, 491, 714, 824, 830, 1269
FauNDI CATATG 1 cut(s) 936
Fnu4HI GCNGC 3 cut(s) 65, 838, 869
FokI GGATG 5 cut(s) 167, 532, 932, 1039, 1208
FriOI GRGCYC 1 cut(s) 1182
Fsp4HI GCNGC 3 cut(s) 65, 838, 869
FspBI CTAG 1 cut(s) 992
GlaI GCGC 2 cut(s) 546, 912
GluI GCNGC 3 cut(s) 65, 838, 869
GsaI CCCAGC 2 cut(s) 335, 1155
GsuI CTGGAG 2 cut(s) 22, 669
HaeIII GGCC 2 cut(s) 631, 648
HapII CCGG 1 cut(s) 626
HhaI GCGC 2 cut(s) 547, 913
Hin1II CATG 8 cut(s) 163, 303, 331, 495, 718, 828, 834, 1273
Hin6I GCGC 2 cut(s) 545, 911
HinP1I GCGC 2 cut(s) 545, 911
HincII GTYRAC 2 cut(s) 102, 418
HindII GTYRAC 2 cut(s) 102, 418
HinfI GANTC 6 cut(s) 6, 433, 1059, 1078, 1172, 1242
HpaII CCGG 1 cut(s) 626
HphI GGTGA 3 cut(s) 267, 604, 1268
Hpy166II GTNNAC 4 cut(s) 77, 102, 418, 997
Hpy188I TCNGA 3 cut(s) 149, 898, 1177
Hpy188III TCNNGA 4 cut(s) 132, 142, 253, 715
Hpy8I GTNNAC 4 cut(s) 77, 102, 418, 997
Hpy99I CGWCG 2 cut(s) 267, 1297
HpyAV CCTTC 2 cut(s) 687, 754
HpyCH4III ACNGT 4 cut(s) 362, 562, 786, 1265
HpyCH4IV ACGT 2 cut(s) 24, 98
HpyF10VI GCNNNNNNNGC 4 cut(s) 816, 939, 988, 1153
HpyF3I CTNAG 1 cut(s) 895
HpySE526I ACGT 2 cut(s) 24, 98
Hsp92II CATG 8 cut(s) 163, 303, 331, 495, 718, 828, 834, 1273
HspAI GCGC 2 cut(s) 545, 911
Kzo9I GATC 8 cut(s) 29, 115, 124, 144, 411, 502, 526, 1199
LmnI GCTCC 3 cut(s) 335, 1177, 1185
Lsp1109I GCAGC 3 cut(s) 51, 824, 855
LweI GCATC 5 cut(s) 217, 510, 1134, 1165, 1273
MabI ACCWGGT 1 cut(s) 277
MaeI CTAG 1 cut(s) 992
MaeII ACGT 2 cut(s) 24, 98
MaeIII GTNAC 4 cut(s) 235, 495, 556, 1075
MalI GATC 8 cut(s) 31, 117, 126, 146, 413, 504, 528, 1201
MboI GATC 8 cut(s) 29, 115, 124, 144, 411, 502, 526, 1199
MboII GAAGA 2 cut(s) 780, 870
MflI RGATCY 2 cut(s) 29, 1199
MhlI GDGCHC 4 cut(s) 340, 816, 944, 1182
MluCI AATT 8 cut(s) 196, 240, 450, 535, 746, 951, 1005, 1204
MlyI GAGTC 4 cut(s) 427, 1072, 1181, 1251
MmeI TCCRAC 1 cut(s) 1155
MnlI CCTC 3 cut(s) 139, 467, 1010
Mph1103I ATGCAT 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 361
MseI TTAA 6 cut(s) 44, 188, 372, 663, 1122, 1191
MslI CAYNNNNRTG 4 cut(s) 292, 393, 809, 829
MspCI CTTAAG 1 cut(s) 1190
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 4 cut(s) 279, 627, 633, 687
Mva1269I GAATGC 3 cut(s) 267, 625, 871
MvaI CCWGG 3 cut(s) 279, 633, 687
MvnI CGCG 1 cut(s) 547
MwoI GCNNNNNNNGC 4 cut(s) 816, 939, 988, 1153
NciI CCSGG 1 cut(s) 627
NdeI CATATG 1 cut(s) 936
NdeII GATC 8 cut(s) 29, 115, 124, 144, 411, 502, 526, 1199
NlaIII CATG 8 cut(s) 163, 303, 331, 495, 718, 828, 834, 1273
NlaIV GGNNCC 3 cut(s) 630, 765, 1046
NmuCI GTSAC 1 cut(s) 1075
NsiI ATGCAT 1 cut(s) 215
NspI RCATGY 3 cut(s) 331, 828, 1273
OliI CACNNNNGTG 1 cut(s) 809
PaeI GCATGC 2 cut(s) 331, 1273
PagI TCATGA 1 cut(s) 714
PciI ACATGT 1 cut(s) 824
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 3 cut(s) 267, 625, 871
PdmI GAANNNNTTC 1 cut(s) 361
PfeI GAWTC 2 cut(s) 6, 1059
PkrI GCNGC 3 cut(s) 66, 839, 870
PleI GAGTC 4 cut(s) 427, 1072, 1180, 1250
PpsI GAGTC 4 cut(s) 427, 1072, 1180, 1250
PscI ACATGT 1 cut(s) 824
PsiI TTATAA 1 cut(s) 320
Psp124BI GAGCTC 1 cut(s) 1182
Psp1406I AACGTT 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 277, 631, 685
PspFI CCCAGC 2 cut(s) 331, 1151
PspGI CCWGG 3 cut(s) 277, 631, 685
PspN4I GGNNCC 3 cut(s) 630, 765, 1046
PspPI GGNCC 2 cut(s) 629, 647
PsrI GAACNNNNNNTAC 2 cut(s) 1084, 1116
PsuI RGATCY 2 cut(s) 29, 1199
RsaI GTAC 3 cut(s) 193, 736, 928
RsaNI GTAC 3 cut(s) 192, 735, 927
RseI CAYNNNNRTG 4 cut(s) 292, 393, 809, 829
SacI GAGCTC 1 cut(s) 1182
SaqAI TTAA 6 cut(s) 44, 188, 372, 663, 1122, 1191
SatI GCNGC 3 cut(s) 65, 838, 869
Sau3AI GATC 8 cut(s) 29, 115, 124, 144, 411, 502, 526, 1199
Sau96I GGNCC 2 cut(s) 629, 647
SchI GAGTC 4 cut(s) 427, 1072, 1181, 1251
ScrFI CCNGG 4 cut(s) 279, 627, 633, 687
SduI GDGCHC 4 cut(s) 340, 816, 944, 1182
SexAI ACCWGGT 1 cut(s) 277
SfaNI GCATC 5 cut(s) 217, 510, 1134, 1165, 1273
SmiMI CAYNNNNRTG 4 cut(s) 292, 393, 809, 829
SmlI CTYRAG 2 cut(s) 705, 1190
SmoI CTYRAG 2 cut(s) 705, 1190
SphI GCATGC 2 cut(s) 331, 1273
Sse9I AATT 8 cut(s) 196, 240, 450, 535, 746, 951, 1005, 1204
SspMI CTAG 1 cut(s) 992
SstI GAGCTC 1 cut(s) 1182
StyD4I CCNGG 4 cut(s) 277, 625, 631, 685
TaaI ACNGT 4 cut(s) 362, 562, 786, 1265
TaiI ACGT 2 cut(s) 27, 101
TaqI TCGA 5 cut(s) 365, 431, 483, 529, 1170
TasI AATT 8 cut(s) 196, 240, 450, 535, 746, 951, 1005, 1204
TatI WGTACW 1 cut(s) 734
TfiI GAWTC 2 cut(s) 6, 1059
Tru1I TTAA 6 cut(s) 44, 188, 372, 663, 1122, 1191
Tru9I TTAA 6 cut(s) 44, 188, 372, 663, 1122, 1191
TscAI CASTG 2 cut(s) 789, 1080
TseFI GTSAC 1 cut(s) 1075
TseI GCWGC 3 cut(s) 64, 837, 868
Tsp45I GTSAC 1 cut(s) 1075
TspDTI ATGAA 3 cut(s) 480, 819, 870
TspGWI ACGGA 3 cut(s) 22, 772, 1281
TspRI CASTG 2 cut(s) 789, 1080
Vha464I CTTAAG 1 cut(s) 1190
XagI CCTNNNNNAGG 1 cut(s) 684
XapI RAATTY 1 cut(s) 196
XceI RCATGY 3 cut(s) 331, 828, 1273
XmnI GAANNNNTTC 1 cut(s) 361
XspI CTAG 1 cut(s) 992
Zsp2I ATGCAT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.