RchiOBHm_Chr5g0068431

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
74408075 .. 74409126
1052 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGCTACCCCACCACATAGCCACATCTTCGTTTTTGATTACTTCCACACTTTCCATCACTCGCCGCAGTTACGGTTGGCTTCGAGAAGGTGATGAATGTTATTGTTCCAGAGCAATAGTGGTGCCTTCTGGATTCTTTAATTTGTCTTGCTTGTCTGGTAAAGTCCACATAGTTAGTCTGGATTTGTCTGGATATGCCACTTTTCCAATTAACAATTTATCCATCCTAATATTATACTTATTTTCACTTTGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.33

Weight (kDa)

7.71

Isoelectric Point (pI)

65.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025043)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0068431
rosa_roxburghii Rroxscaffold_1G00012350 Rroxscaffold_1G00013080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AciI CCGC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 101
BanI GGYRCC 1 cut(s) 121
BccI CCATC 2 cut(s) 62, 230
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 123
BseGI GGATG 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 121
BspACI CCGC 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 74
BstF5I GGATG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 222
CviJI RGCY 2 cut(s) 20, 79
CviKI_1 RGCY 2 cut(s) 20, 79
FaiI YATR 4 cut(s) 17, 170, 195, 235
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 64
HinfI GANTC 1 cut(s) 132
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 166
Hpy188III TCNNGA 5 cut(s) 83, 108, 129, 179, 189
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 2 cut(s) 80, 135
HpyCH4III ACNGT 1 cut(s) 74
LpnPI CCDG 5 cut(s) 114, 121, 141, 164, 174
MaeIII GTNAC 1 cut(s) 68
MboII GAAGA 1 cut(s) 18
MluCI AATT 3 cut(s) 139, 207, 214
MseI TTAA 3 cut(s) 138, 210, 253
NlaIV GGNNCC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 123
SaqAI TTAA 3 cut(s) 138, 210, 253
SatI GCNGC 1 cut(s) 64
SetI ASST 1 cut(s) 91
SgeI CNNG 9 cut(s) 72, 95, 120, 141, 159, 163, 168, 191, 201
Sse9I AATT 3 cut(s) 139, 207, 214
SsiI CCGC 1 cut(s) 64
SspI AATATT 1 cut(s) 231
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 82
TasI AATT 3 cut(s) 139, 207, 214
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 3 cut(s) 138, 210, 253
Tru9I TTAA 3 cut(s) 138, 210, 253
TspDTI ATGAA 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.