Rroxscaffold_1G00013080

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
16160951 .. 16163850
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013080.1

Sequence Viewer

Length: 186 bp
ATGAGCGATTGTTCTAGAGGTGATGAATGTTATTGTTCCAGAGCAATAGTGGTGCCTTCTGGATTCTTTAATTTGTCTTGCTTGTCTGGTAAAGTCCACATAGTTAGTCTGGATTTGTCTGGATATGTCACTTTTCCAGTTAACAATTTATCCATCCTAATATTATACTTATTTTCACTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.67

Weight (kDa)

5.41

Isoelectric Point (pI)

57.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0025043)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0068431
rosa_roxburghii Rroxscaffold_1G00012350 Rroxscaffold_1G00013080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 32
BanI GGYRCC 1 cut(s) 52
BccI CCATC 1 cut(s) 161
BfaI CTAG 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 153
FaiI YATR 3 cut(s) 101, 126, 166
FokI GGATG 1 cut(s) 140
FspBI CTAG 1 cut(s) 15
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 63
HpaI GTTAAC 1 cut(s) 142
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 2 cut(s) 97, 142
Hpy188III TCNNGA 5 cut(s) 15, 39, 60, 110, 120
Hpy8I GTNNAC 2 cut(s) 97, 142
HpyAV CCTTC 1 cut(s) 66
KspAI GTTAAC 1 cut(s) 142
LpnPI CCDG 6 cut(s) 45, 52, 72, 95, 105, 150
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 127
MluCI AATT 2 cut(s) 70, 145
MnlI CCTC 1 cut(s) 11
MseI TTAA 2 cut(s) 69, 141
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 69, 141
SetI ASST 1 cut(s) 22
SgeI CNNG 9 cut(s) 27, 51, 72, 90, 94, 99, 122, 132, 149
Sse9I AATT 2 cut(s) 70, 145
SspI AATATT 1 cut(s) 162
SspMI CTAG 1 cut(s) 15
TasI AATT 2 cut(s) 70, 145
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 2 cut(s) 69, 141
Tru9I TTAA 2 cut(s) 69, 141
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 39
XbaI TCTAGA 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.