Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030297

Physical Location & Seq

Genomic Coordinates Forward (+)

75945419 .. 75948027

Gene Structure 2609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGAATGAAGAAGATGATATGGAAGAGATTGAATTGCCTCCTAAAGTTTGTGACTTGTTTAATGGGGATTGGGTTTTCAATCCTGTGTCTCATCCTTTGTATAAAGAAGACCAATGCGAGTTCTTGACAACCCAAGTGACTTGTATGAGGAATGGAAGAAGAAACTCTATGTGTCAACATTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

62

Amino Acids

7.46

Weight (kDa)

4.6

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	16 - 62	2e-16	PMR5 N terminal Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030297)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0070131
rosa_samantha	Rh1AG365300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	32, 79
Alw26I	GTCTC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	114
BseGI	GGATG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
FaiI	YATR	4 cut(s)	20, 102, 146, 170
FokI	GGATG	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	176
HindII	GTYRAC	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	176
LpnPI	CCDG	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	50, 136
MboII	GAAGA	6 cut(s)	20, 23, 35, 119, 168, 171
MluCI	AATT	1 cut(s)	32
MnlI	CCTC	2 cut(s)	48, 141
MseI	TTAA	1 cut(s)	60
NmuCI	GTSAC	2 cut(s)	50, 136
SaqAI	TTAA	1 cut(s)	60
SgeI	CNNG	6 cut(s)	67, 95, 130, 136, 146, 153
Sse9I	AATT	1 cut(s)	32
TasI	AATT	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TseFI	GTSAC	2 cut(s)	50, 136
Tsp45I	GTSAC	2 cut(s)	50, 136
TspDTI	ATGAA	2 cut(s)	17, 21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.