Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0030297

Physical Location & Seq

Genomic Coordinates Forward (+)

60067010 .. 60070143

Gene Structure 3134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG365300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGAAGAGATTGAATTGCCTCCTGAAGATTGTGACTTGTTTAATGGGGACTGGGTTTTCGATCCTGTGACTCATCCTTTGTATAAAGAAGACGAATGTGAGTTCTTGACGGCCCAAGTGACTTGTATGAGGAATGGAAGAAAGGACTCTCTGTATCAACATTGGAGATGGCAGCCCAGAGATTGTAATCTTCCAAACCAAATTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

69

Amino Acids

8.33

Weight (kDa)

4.37

Isoelectric Point (pI)

61.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	10 - 63	1.9e-24	PMR5 N terminal Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030297)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0070131
rosa_samantha	Rh1AG365300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	14
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	172
ArsI	GACNNNNNNTTYG	4 cut(s)	41, 61, 73, 93
AspS9I	GGNCC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	1 cut(s)	126
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	112
BmrI	ACTGGG	1 cut(s)	61
BmuI	ACTGGG	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	56
Bse8I	GATNNNNATC	1 cut(s)	186
BseGI	GGATG	1 cut(s)	73
BseJI	GATNNNNATC	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	112
CviJI	RGCY	2 cut(s)	113, 175
CviKI_1	RGCY	2 cut(s)	113, 175
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	45
FaiI	YATR	2 cut(s)	84, 128
FaqI	GGGAC	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	173
GluI	GCNGC	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	113
HinfI	GANTC	2 cut(s)	70, 146
Hpy188III	TCNNGA	2 cut(s)	23, 106
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	4 cut(s)	36, 37, 78, 190
Lsp1109I	GCAGC	1 cut(s)	184
MaeIII	GTNAC	3 cut(s)	32, 67, 118
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	5 cut(s)	17, 38, 101, 150, 182
MluCI	AATT	2 cut(s)	14, 201
MlyI	GAGTC	2 cut(s)	64, 140
MnlI	CCTC	2 cut(s)	30, 123
MseI	TTAA	1 cut(s)	42
NdeII	GATC	1 cut(s)	61
NmuCI	GTSAC	3 cut(s)	32, 67, 118
PkrI	GCNGC	1 cut(s)	174
PleI	GAGTC	2 cut(s)	64, 140
PpsI	GAGTC	2 cut(s)	64, 140
PspPI	GGNCC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	2 cut(s)	64, 140
SgeI	CNNG	8 cut(s)	35, 49, 64, 77, 118, 128, 135, 189
Sse9I	AATT	2 cut(s)	14, 201
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	14, 201
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	3 cut(s)	32, 67, 118
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	3 cut(s)	32, 67, 118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.