Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0028508

Physical Location & Seq

Genomic Coordinates Reverse (-)

75950937 .. 75953011

Gene Structure 2075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGGTCGTTGTGTTATCTGTGGAGGAGTCGGGATTTCTGATGCTTACTATTGCAAAGAGTGTACACAGCAGGAGAAAGACAGGGATGGATGCCCAAAGATTGTCAATTTAGGAAGTGCCAAAACAGATCTCTTTTATGAACGGAAGAAATACGGTTTTAAGAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PHF5

Protein Analysis

56

Amino Acids

6.36

Weight (kDa)

9.08

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHF5	PF03660	2 - 50	2.1e-21	PHF5-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028508)

Species	Orthologous Gene IDs
malus_domestica	MD03G1225400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0070151

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	64
BccI	CCATC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	127
BmsI	GCATC	2 cut(s)	31, 80
BseGI	GGATG	2 cut(s)	91, 95
BseRI	GAGGAG	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	62
BssMI	GATC	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	62
BstF5I	GGATG	2 cut(s)	91, 95
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	91, 95
Csp6I	GTAC	1 cut(s)	63
CviQI	GTAC	1 cut(s)	63
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
FaiI	YATR	1 cut(s)	138
FokI	GGATG	2 cut(s)	98, 102
HinfI	GANTC	1 cut(s)	27
Hpy166II	GTNNAC	2 cut(s)	63, 65
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	31
Hpy8I	GTNNAC	2 cut(s)	63, 65
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	2 cut(s)	56, 67
LweI	GCATC	2 cut(s)	31, 80
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	1 cut(s)	157
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	159
NdeII	GATC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	36
SfaNI	GCATC	2 cut(s)	31, 80
SgeI	CNNG	3 cut(s)	43, 83, 94
Sse9I	AATT	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	155
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.