RchiOBHm_Chr5g0079041

Selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0030287
Physical Location & Seq
Reverse (-)
84800421 .. 84801537
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGGACTCGCCGCCGCCACCGACAGAGGCCTCCGTCGACGCCGTCACGCGCAATTTGCGCAACCAGAGCTTGGTCGCCGACGGTGGGAATAACGCGCTGAGAGCGCGGTTGAAGCTTGAAGATCTGAACTGGGATAACTCGTTTGTTAGAGAGTTGCCTGGTGATCCCAGGACCGATACGTTTCCTCGAGAGGTGTTGCGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0061

Protein Analysis

68

Amino Acids

7.57

Weight (kDa)

4.89

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030287)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079041
rosa_multiflora Rmu_sc0031972.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 70
AccI GTMKAC 1 cut(s) 36
AccII CGCG 3 cut(s) 49, 95, 106
AciI CCGC 3 cut(s) 11, 14, 106
AclWI GGATC 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 70, 84
AgsI TTSAA 2 cut(s) 112, 119
AjnI CCWGG 2 cut(s) 157, 167
AluBI AGCT 2 cut(s) 69, 115
AluI AGCT 2 cut(s) 69, 115
AlwI GGATC 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 1 cut(s) 27
AspLEI GCGC 4 cut(s) 51, 60, 97, 106
AspS9I GGNCC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 171
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 2 cut(s) 159, 169
BglII AGATCT 1 cut(s) 121
BisI GCNGC 2 cut(s) 11, 14
BlsI GCNGC 2 cut(s) 12, 15
Bme1390I CCNGG 2 cut(s) 159, 169
Bme18I GGWCC 1 cut(s) 171
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 171
BmrFI CCNGG 2 cut(s) 159, 169
BmrI ACTGGG 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 139
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 84
Bse1I ACTGG 1 cut(s) 134
BseBI CCWGG 2 cut(s) 159, 169
BseDI CCNNGG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 70, 84
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 134
Bsh1236I CGCG 3 cut(s) 49, 95, 106
BshFI GGCC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 186
BslI CCNNNNNNNGG 2 cut(s) 70, 84
BsnI GGCC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 2 cut(s) 121, 163
BspACI CCGC 3 cut(s) 11, 14, 106
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 90
BspFNI CGCG 3 cut(s) 49, 95, 106
BspPI GGATC 1 cut(s) 158
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 2 cut(s) 121, 163
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 159, 169
Bst4CI ACNGT 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 98
BstFNI CGCG 3 cut(s) 49, 95, 106
BstHHI GCGC 4 cut(s) 51, 60, 97, 106
BstKTI GATC 2 cut(s) 124, 166
BstMBI GATC 2 cut(s) 121, 163
BstMWI GCNNNNNNNGC 6 cut(s) 55, 57, 66, 101, 103, 112
BstNI CCWGG 2 cut(s) 159, 169
BstSCI CCNGG 2 cut(s) 157, 167
BstUI CGCG 3 cut(s) 49, 95, 106
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 201
CfoI GCGC 4 cut(s) 51, 60, 97, 106
Cfr13I GGNCC 1 cut(s) 171
CseI GACGC 1 cut(s) 47
CviJI RGCY 3 cut(s) 29, 69, 115
CviKI_1 RGCY 3 cut(s) 29, 69, 115
DdeI CTNAG 1 cut(s) 98
DpnI GATC 2 cut(s) 123, 165
DpnII GATC 2 cut(s) 121, 163
Eco147I AGGCCT 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 157, 167
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 11, 14
Fsp4HI GCNGC 2 cut(s) 11, 14
FspI TGCGCA 1 cut(s) 59
GlaI GCGC 4 cut(s) 50, 59, 96, 105
GluI GCNGC 2 cut(s) 11, 14
HaeIII GGCC 1 cut(s) 29
HgaI GACGC 1 cut(s) 47
HhaI GCGC 4 cut(s) 51, 60, 97, 106
Hin1I GRCGYC 1 cut(s) 39
Hin6I GCGC 4 cut(s) 49, 58, 95, 104
HinP1I GCGC 4 cut(s) 49, 58, 95, 104
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 3 cut(s) 38, 41, 83
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 57, 66, 101, 103, 112
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 179
Hsp92I GRCGYC 1 cut(s) 39
HspAI GCGC 4 cut(s) 49, 58, 95, 104
Kzo9I GATC 2 cut(s) 121, 163
LpnPI CCDG 6 cut(s) 77, 115, 144, 154, 171, 181
MaeII ACGT 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 123, 165
MboI GATC 2 cut(s) 121, 163
MboII GAAGA 1 cut(s) 131
MflI RGATCY 1 cut(s) 121
MluCI AATT 1 cut(s) 52
MnlI CCTC 4 cut(s) 19, 40, 184, 195
MspR9I CCNGG 2 cut(s) 159, 169
MvaI CCWGG 2 cut(s) 159, 169
MvnI CGCG 3 cut(s) 49, 95, 106
MwoI GCNNNNNNNGC 6 cut(s) 55, 57, 66, 101, 103, 112
NdeII GATC 2 cut(s) 121, 163
NmuCI GTSAC 1 cut(s) 43
NsbI TGCGCA 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 186
PceI AGGCCT 1 cut(s) 29
PflFI GACNNNGTC 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 70
PkrI GCNGC 2 cut(s) 12, 15
Psp6I CCWGG 2 cut(s) 157, 167
PspGI CCWGG 2 cut(s) 157, 167
PspPI GGNCC 1 cut(s) 171
PsuI RGATCY 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 41
SalI GTCGAC 1 cut(s) 35
SatI GCNGC 2 cut(s) 11, 14
Sau3AI GATC 2 cut(s) 121, 163
Sau96I GGNCC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 159, 169
SetI ASST 4 cut(s) 71, 117, 182, 195
Sfr274I CTCGAG 1 cut(s) 186
SgrDI CGTCGACG 1 cut(s) 35
SinI GGWCC 1 cut(s) 171
SlaI CTCGAG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 1 cut(s) 52
SseBI AGGCCT 1 cut(s) 29
SsiI CCGC 3 cut(s) 11, 14, 106
StuI AGGCCT 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 157, 167
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 1 cut(s) 182
TaqI TCGA 2 cut(s) 36, 187
TaqII GACCGA 1 cut(s) 188
TasI AATT 1 cut(s) 52
TauI GCSGC 2 cut(s) 13, 16
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 22
Tth111I GACNNNGTC 1 cut(s) 41
Van91I CCANNNNNTGG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 171
XhoI CTCGAG 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.