Rmu_sc0031972.1_g000001

Selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031972.1
OG0030287
Physical Location & Seq
Forward (+)
1715 .. 2109
395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031972.1_g000001.1.cds

Sequence Viewer

Length: 395 bp
atgcaaatcctttcgcatttctcttccaaagcctccttaccttcttctctccttccctctctcacctccgccctcatcttccgccgtcgccccccgaatttccccttttacccctccactgccttcaaatttcccaccctcgcatgccacctcagctccgccggccatagcccccaacaatcagcagctcccatggactcgccgccgccaccgacagaggcctccgtcgacgccgtcacgcgcgatttgcgcaaccagagcttggccgccgacggtgggaataacgcgccgagagcgcggttgaagcttgaagatctgaactgggataactcgtttgttagagagttgcctggtgatcccaggaccgatacgtttccgcgagaggtcagctctgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0061

Protein Analysis

132

Amino Acids

14.33

Weight (kDa)

7.98

Isoelectric Point (pI)

72.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030287)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079041
rosa_multiflora Rmu_sc0031972.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 262
AccI GTMKAC 1 cut(s) 228
AccII CGCG 5 cut(s) 241, 243, 287, 298, 379
AciI CCGC 8 cut(s) 69, 82, 159, 203, 206, 267, 298, 377
AclWI GGATC 1 cut(s) 350
AcoI YGGCCR 2 cut(s) 163, 264
AcsI RAATTY 2 cut(s) 97, 128
AcyI GRCGYC 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 262, 276
AgsI TTSAA 3 cut(s) 127, 304, 311
AjnI CCWGG 2 cut(s) 349, 359
AluBI AGCT 5 cut(s) 156, 188, 261, 307, 390
AluI AGCT 5 cut(s) 156, 188, 261, 307, 390
AlwI GGATC 1 cut(s) 350
AoxI GGCC 3 cut(s) 163, 219, 264
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 2 cut(s) 97, 128
AspLEI GCGC 4 cut(s) 243, 252, 289, 298
AspS9I GGNCC 1 cut(s) 363
AsuHPI GGTGA 2 cut(s) 55, 365
AvaII GGWCC 1 cut(s) 363
BbvCI CCTCAGC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 197
BceAI ACGGC 2 cut(s) 69, 218
BciT130I CCWGG 2 cut(s) 351, 361
BglII AGATCT 1 cut(s) 313
BisI GCNGC 4 cut(s) 186, 203, 206, 267
BlsI GCNGC 4 cut(s) 187, 204, 207, 268
Bme1390I CCNGG 2 cut(s) 351, 361
Bme18I GGWCC 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 363
BmrFI CCNGG 2 cut(s) 351, 361
BmrI ACTGGG 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 331
BplI GAGNNNNNCTC 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 192, 359
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 276
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 326
BseBI CCWGG 2 cut(s) 351, 361
BseDI CCNNGG 2 cut(s) 192, 359
BseLI CCNNNNNNNGG 2 cut(s) 262, 276
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 197
Bsh1236I CGCG 5 cut(s) 241, 243, 287, 298, 379
BshFI GGCC 3 cut(s) 165, 221, 266
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 2 cut(s) 262, 276
BsnI GGCC 3 cut(s) 165, 221, 266
Bsp143I GATC 2 cut(s) 313, 355
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 8 cut(s) 69, 82, 159, 203, 206, 267, 298, 377
BspANI GGCC 3 cut(s) 165, 221, 266
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 5 cut(s) 241, 243, 287, 298, 379
BspPI GGATC 1 cut(s) 350
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 192, 359
BssMI GATC 2 cut(s) 313, 355
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 351, 361
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 145, 163
BstDEI CTNAG 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 192
BstFNI CGCG 5 cut(s) 241, 243, 287, 298, 379
BstHHI GCGC 4 cut(s) 243, 252, 289, 298
BstKTI GATC 2 cut(s) 316, 358
BstMBI GATC 2 cut(s) 313, 355
BstMWI GCNNNNNNNGC 8 cut(s) 153, 162, 247, 249, 258, 293, 295, 304
BstNI CCWGG 2 cut(s) 351, 361
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 349, 359
BstUI CGCG 5 cut(s) 241, 243, 287, 298, 379
BstV1I GCAGC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 3 cut(s) 165, 221, 266
BtgI CCRYGG 1 cut(s) 192
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 145, 163
CfoI GCGC 4 cut(s) 243, 252, 289, 298
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 363
CseI GACGC 1 cut(s) 239
CviAII CATG 2 cut(s) 144, 193
DdeI CTNAG 1 cut(s) 152
DpnI GATC 2 cut(s) 315, 357
DpnII GATC 2 cut(s) 313, 355
EaeI YGGCCR 2 cut(s) 163, 264
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
EciI GGCGGA 3 cut(s) 58, 71, 148
Eco130I CCWWGG 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 363
EcoRII CCWGG 2 cut(s) 349, 359
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 147, 196
FaiI YATR 3 cut(s) 145, 168, 194
FatI CATG 2 cut(s) 143, 192
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 4 cut(s) 186, 203, 206, 267
Fsp4HI GCNGC 4 cut(s) 186, 203, 206, 267
FspI TGCGCA 1 cut(s) 251
GlaI GCGC 4 cut(s) 242, 251, 288, 297
GluI GCNGC 4 cut(s) 186, 203, 206, 267
HaeIII GGCC 3 cut(s) 165, 221, 266
HapII CCGG 1 cut(s) 162
HgaI GACGC 1 cut(s) 239
HhaI GCGC 4 cut(s) 243, 252, 289, 298
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 2 cut(s) 147, 196
Hin6I GCGC 4 cut(s) 241, 250, 287, 296
HinP1I GCGC 4 cut(s) 241, 250, 287, 296
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 162
HphI GGTGA 2 cut(s) 55, 365
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 318
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 4 cut(s) 90, 230, 233, 275
HpyAV CCTTC 3 cut(s) 51, 62, 133
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 371
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 8 cut(s) 153, 162, 247, 249, 258, 293, 295, 304
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 371
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 2 cut(s) 147, 196
HspAI GCGC 4 cut(s) 241, 250, 287, 296
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Kzo9I GATC 2 cut(s) 313, 355
LmnI GCTCC 2 cut(s) 161, 193
LpnPI CCDG 8 cut(s) 175, 269, 307, 336, 346, 363, 373, 378
Lsp1109I GCAGC 1 cut(s) 197
MaeII ACGT 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 235
MalI GATC 2 cut(s) 315, 357
MboI GATC 2 cut(s) 313, 355
MboII GAAGA 4 cut(s) 15, 36, 70, 323
MflI RGATCY 1 cut(s) 313
MluCI AATT 2 cut(s) 97, 128
MlyI GAGTC 1 cut(s) 191
MroNI GCCGGC 1 cut(s) 161
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 2 cut(s) 351, 361
MvaI CCWGG 2 cut(s) 351, 361
MvnI CGCG 5 cut(s) 241, 243, 287, 298, 379
MwoI GCNNNNNNNGC 8 cut(s) 153, 162, 247, 249, 258, 293, 295, 304
NaeI GCCGGC 1 cut(s) 163
NcoI CCATGG 1 cut(s) 192
NdeII GATC 2 cut(s) 313, 355
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 2 cut(s) 147, 196
NmeAIII GCCGAG 1 cut(s) 315
NmuCI GTSAC 1 cut(s) 235
NsbI TGCGCA 1 cut(s) 251
NspI RCATGY 1 cut(s) 147
PaeI GCATGC 1 cut(s) 147
PceI AGGCCT 1 cut(s) 221
PdiI GCCGGC 1 cut(s) 163
PflFI GACNNNGTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 4 cut(s) 187, 204, 207, 268
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp6I CCWGG 2 cut(s) 349, 359
PspGI CCWGG 2 cut(s) 349, 359
PspPI GGNCC 1 cut(s) 363
PsuI RGATCY 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 233
SalI GTCGAC 1 cut(s) 227
SatI GCNGC 4 cut(s) 186, 203, 206, 267
Sau3AI GATC 2 cut(s) 313, 355
Sau96I GGNCC 1 cut(s) 363
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 351, 361
SgrDI CGTCGACG 1 cut(s) 227
SinI GGWCC 1 cut(s) 363
SphI GCATGC 1 cut(s) 147
Sse9I AATT 2 cut(s) 97, 128
SseBI AGGCCT 1 cut(s) 221
SsiI CCGC 8 cut(s) 69, 82, 159, 203, 206, 267, 298, 377
StuI AGGCCT 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 349, 359
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 1 cut(s) 374
TaqI TCGA 1 cut(s) 228
TaqII GACCGA 1 cut(s) 380
TasI AATT 2 cut(s) 97, 128
TauI GCSGC 3 cut(s) 205, 208, 269
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 235
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 1 cut(s) 124
Tth111I GACNNNGTC 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 363
XapI RAATTY 2 cut(s) 97, 128
XceI RCATGY 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.