RchiOBHm_Chr5g0080451

Belongs to the monovalent cation proton antiporter 1 (CPA1) transporter (TC 2.A.36) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
86449459 .. 86449894
436 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGCTCTTAGTGTTTAGTGAAGATCTTTTCTTAATCTATCTGCTTCCTCCGATCATTTTCAATGCCGGGTTCCAACTGAAGAAGAAGCAGTTTTTTTGTAACTTTATGACAATCATGATGTTTGGAGCTGTGCGCAATCAAGATGAGACACCTATGTTGTACAGCCTGGTTTTTGGGGAAGCTGTAATCAATGATGCCACATCGGTCGTGCTTGGGATGAAATCAGCTGTTCCAGATTTTTGTGTCCCAAATTTGTCCCATCAACTTGATTAG

Protein Analysis

90

Amino Acids

10.19

Weight (kDa)

4.79

Isoelectric Point (pI)

18.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0026686)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0080451
rosa_roxburghii Rroxscaffold_1G00002970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 134
AcsI RAATTY 1 cut(s) 250
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 1 cut(s) 61
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 3 cut(s) 128, 182, 227
AluI AGCT 3 cut(s) 128, 182, 227
Alw26I GTCTC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 250
AspLEI GCGC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 67
BccI CCATC 1 cut(s) 267
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 140
BglII AGATCT 1 cut(s) 22
Bme1390I CCNGG 2 cut(s) 67, 167
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 2 cut(s) 67, 167
BmsI GCATC 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 207
BsiEI CGRYCG 1 cut(s) 207
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 2 cut(s) 230, 241
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 2 cut(s) 230, 241
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 2 cut(s) 22, 51
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 159
BssMI GATC 2 cut(s) 22, 51
Bst2UI CCWGG 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 2 cut(s) 25, 54
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 22, 51
BstMCI CGRYCG 1 cut(s) 207
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 65, 165
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BtsCI GGATG 1 cut(s) 222
CciI TCATGA 1 cut(s) 114
CfoI GCGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 115
CviJI RGCY 4 cut(s) 128, 165, 182, 227
CviKI_1 RGCY 4 cut(s) 128, 165, 182, 227
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 7
DpnI GATC 2 cut(s) 24, 53
DpnII GATC 2 cut(s) 22, 51
Eco57I CTGAAG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 165
FaeI CATG 1 cut(s) 118
FaiI YATR 3 cut(s) 107, 116, 155
FaqI GGGAC 2 cut(s) 230, 241
FatI CATG 1 cut(s) 114
FokI GGATG 1 cut(s) 229
FspI TGCGCA 1 cut(s) 134
GlaI GCGC 1 cut(s) 134
HapII CCGG 1 cut(s) 66
HhaI GCGC 1 cut(s) 135
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HpaII CCGG 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 3 cut(s) 115, 140, 233
HpyF3I CTNAG 1 cut(s) 7
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 1 cut(s) 133
Kzo9I GATC 2 cut(s) 22, 51
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 4 cut(s) 79, 152, 179, 246
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 98
MalI GATC 2 cut(s) 24, 53
MboI GATC 2 cut(s) 22, 51
MboII GAAGA 3 cut(s) 32, 91, 94
MflI RGATCY 1 cut(s) 22
MluCI AATT 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 1 cut(s) 57
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 67, 167
MvaI CCWGG 1 cut(s) 167
NciI CCSGG 1 cut(s) 67
NdeII GATC 2 cut(s) 22, 51
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 71
NsbI TGCGCA 1 cut(s) 134
PagI TCATGA 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 2 cut(s) 22, 51
ScrFI CCNGG 2 cut(s) 67, 167
SetI ASST 4 cut(s) 130, 154, 184, 229
SfaNI GCATC 1 cut(s) 184
SgeI CNNG 9 cut(s) 78, 79, 127, 152, 178, 179, 220, 224, 245
Sse9I AATT 1 cut(s) 250
StyD4I CCNGG 2 cut(s) 65, 165
TaqII GACCGA 1 cut(s) 193
TasI AATT 1 cut(s) 250
TatI WGTACW 1 cut(s) 159
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 233
XapI RAATTY 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.