Rroxscaffold_1G00002970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0026686
Physical Location & Seq
Forward (+)
3464321 .. 3469262
4942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00002970.1

Sequence Viewer

Length: 390 bp
ATGATTGACAAGAAGTTAAGTGCCAATGATTCTTGGATTCTCGCAGACAAATTAATCATGGAGAGATCTAATGTCTCCAAGTTCTCAAGGTTGGAAATTTGGTCAGGAATGTTGCCGGAAAAATGGTTAACACTGAGATCCAAAGCATGGAGAAGCTGCAATTGGCCAATCTCACTAGCATTGGTTCCCGCAAGAATCAAGATCGAAGATTATCTTGCACGTGGAGCAATATATTTTGCAACTGATTCTGTTTTTGGGGAAGCTGTAATCAATGATGCCACATCGGTCGTGCTTGGGATGAAATTAGTTGACCCAGATTTCTGTGTCTCAATTCTGTCCCCTCAACATGATTGGTCCACAGAGATTAAAAAATATATAACAAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.71

Weight (kDa)

7.73

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026686)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0080451
rosa_roxburghii Rroxscaffold_1G00002970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 147
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 1 cut(s) 96
AcvI CACGTG 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 147
AjuI GAANNNNNNNTTGG 2 cut(s) 145, 177
AluBI AGCT 2 cut(s) 156, 263
AluI AGCT 2 cut(s) 156, 263
Alw26I GTCTC 2 cut(s) 79, 331
AlwI GGATC 1 cut(s) 132
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 96
AseI ATTAAT 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 354
AvaII GGWCC 1 cut(s) 354
BalI TGGCCA 1 cut(s) 166
BbrPI CACGTG 1 cut(s) 221
BbvI GCAGC 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 79, 331
BfaI CTAG 1 cut(s) 176
BglII AGATCT 1 cut(s) 65
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 186
BmsI GCATC 1 cut(s) 265
BpuEI CTTGAG 1 cut(s) 70
BsaAI YACGTR 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 1 cut(s) 166
BsiEI CGRYCG 1 cut(s) 288
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 2 cut(s) 79, 331
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 65, 137, 201
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 1 cut(s) 132
BssMI GATC 3 cut(s) 65, 137, 201
BstBAI YACGTR 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 3 cut(s) 68, 140, 204
BstMAI GTCTC 2 cut(s) 79, 331
BstMBI GATC 3 cut(s) 65, 137, 201
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 65, 137
BstYI RGATCY 2 cut(s) 65, 137
BsuRI GGCC 1 cut(s) 166
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 354
CviAII CATG 3 cut(s) 58, 147, 347
CviJI RGCY 3 cut(s) 156, 166, 263
CviKI_1 RGCY 3 cut(s) 156, 166, 263
DdeI CTNAG 1 cut(s) 134
DpnI GATC 3 cut(s) 67, 139, 203
DpnII GATC 3 cut(s) 65, 137, 201
EaeI YGGCCR 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 354
Eco72I CACGTG 1 cut(s) 221
FaeI CATG 3 cut(s) 61, 150, 350
FaiI YATR 6 cut(s) 59, 148, 232, 348, 375, 377
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FaqI GGGAC 1 cut(s) 322
FatI CATG 3 cut(s) 57, 146, 346
FauI CCCGC 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 157
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 116
Hin1II CATG 3 cut(s) 61, 150, 350
HincII GTYRAC 2 cut(s) 129, 310
HindII GTYRAC 2 cut(s) 129, 310
HinfI GANTC 4 cut(s) 29, 37, 195, 245
HpaI GTTAAC 1 cut(s) 129
HpaII CCGG 1 cut(s) 116
Hpy166II GTNNAC 3 cut(s) 129, 310, 357
Hpy188III TCNNGA 2 cut(s) 105, 199
Hpy8I GTNNAC 3 cut(s) 129, 310, 357
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 3 cut(s) 159, 218, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 3 cut(s) 61, 150, 350
KspAI GTTAAC 1 cut(s) 129
Kzo9I GATC 3 cut(s) 65, 137, 201
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 3 cut(s) 90, 129, 327
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 220
MalI GATC 3 cut(s) 67, 139, 203
MboI GATC 3 cut(s) 65, 137, 201
MboII GAAGA 1 cut(s) 218
MfeI CAATTG 1 cut(s) 160
MflI RGATCY 2 cut(s) 65, 137
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 5 cut(s) 50, 96, 160, 302, 330
MluNI TGGCCA 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 1 cut(s) 351
Mox20I TGGCCA 1 cut(s) 166
MscI TGGCCA 1 cut(s) 166
MseI TTAA 5 cut(s) 17, 53, 128, 366, 388
Msp20I TGGCCA 1 cut(s) 166
MspI CCGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 3 cut(s) 65, 137, 201
NlaIII CATG 3 cut(s) 61, 150, 350
NlaIV GGNNCC 1 cut(s) 186
PfeI GAWTC 4 cut(s) 29, 37, 195, 245
PflMI CCANNNNNTGG 1 cut(s) 147
PkrI GCNGC 1 cut(s) 158
PmaCI CACGTG 1 cut(s) 221
PmlI CACGTG 1 cut(s) 221
Ppu21I YACGTR 1 cut(s) 221
PshBI ATTAAT 1 cut(s) 53
PspCI CACGTG 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 2 cut(s) 65, 137
SaqAI TTAA 5 cut(s) 17, 53, 128, 366, 388
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 3 cut(s) 65, 137, 201
Sau96I GGNCC 1 cut(s) 354
SetI ASST 4 cut(s) 92, 158, 223, 265
SfaNI GCATC 1 cut(s) 265
SinI GGWCC 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 5 cut(s) 50, 96, 160, 302, 330
SsiI CCGC 1 cut(s) 189
SspMI CTAG 1 cut(s) 176
TaiI ACGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 204
TaqII GACCGA 1 cut(s) 274
TasI AATT 5 cut(s) 50, 96, 160, 302, 330
TfiI GAWTC 4 cut(s) 29, 37, 195, 245
Tru1I TTAA 5 cut(s) 17, 53, 128, 366, 388
Tru9I TTAA 5 cut(s) 17, 53, 128, 366, 388
TscAI CASTG 1 cut(s) 138
TseI GCWGC 1 cut(s) 156
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 1 cut(s) 138
Van91I CCANNNNNTGG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 354
VspI ATTAAT 1 cut(s) 53
XapI RAATTY 1 cut(s) 96
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.