RchiOBHm_Chr5g0081801

protein At3g15000, mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
87761563 .. 87762313
751 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGGATTTTCTGAGAGACCCAAAGCCTTGCCCTGAGGAGATGGTGAGAACTTATGACGAAACTGTGCTAAAAGGGGTTTATGGGGGTTTATGGGTTTGTGAAGGAGTGGCTGGGAAAATTGGAAGAGGCCTGAGCCTAGATTTGGGCAATGGAAGTGAAGAAGATGATGGGGAATTGGTCTCCATCGCTCTGCCAGCAATGAAGGAGAGAGTTAGAGGAATTTTTTTTTTTTGTTCTCAAACTTTAATCTCTTGTTCCTTCAATCTTTGCTCTGTGAATCTTTGA

Protein Analysis

94

Amino Acids

10.3

Weight (kDa)

4.56

Isoelectric Point (pI)

28.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030229)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0081801
rosa_samantha Rh7CG310000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 262
Alw26I GTCTC 2 cut(s) 9, 184
AoxI GGCC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 33
BccI CCATC 3 cut(s) 34, 161, 191
BcoDI GTCTC 2 cut(s) 9, 184
BfaI CTAG 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 131
BsaI GGTCTC 2 cut(s) 9, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse21I CCTNAGG 1 cut(s) 33
Bse3DI GCAATG 2 cut(s) 154, 204
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMI GCAATG 2 cut(s) 154, 204
BseMII CTCAG 2 cut(s) 24, 122
BseRI GAGGAG 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 110
BshFI GGCC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 9, 184
BsnI GGCC 1 cut(s) 129
Bso31I GGTCTC 2 cut(s) 9, 184
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 2 cut(s) 25, 123
BspTNI GGTCTC 2 cut(s) 9, 184
BsrDI GCAATG 2 cut(s) 154, 204
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 11, 33, 131
BstMAI GTCTC 2 cut(s) 9, 184
BstMWI GCNNNNNNNGC 1 cut(s) 194
Bsu36I CCTNAGG 1 cut(s) 33
BsuRI GGCC 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 195
CviJI RGCY 4 cut(s) 25, 110, 129, 135
CviKI_1 RGCY 4 cut(s) 25, 110, 129, 135
DdeI CTNAG 3 cut(s) 11, 33, 131
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco147I AGGCCT 1 cut(s) 129
Eco31I GGTCTC 2 cut(s) 9, 184
Eco81I CCTNAGG 1 cut(s) 33
FaiI YATR 3 cut(s) 54, 81, 91
FspBI CTAG 1 cut(s) 137
GsaI CCCAGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 129
HinfI GANTC 1 cut(s) 277
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 12
HpyAV CCTTC 3 cut(s) 95, 196, 268
HpyCH4III ACNGT 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 3 cut(s) 11, 33, 131
LpnPI CCDG 4 cut(s) 45, 96, 143, 207
MaeI CTAG 1 cut(s) 137
MboII GAAGA 3 cut(s) 135, 170, 173
MluCI AATT 3 cut(s) 117, 173, 219
MnlI CCTC 3 cut(s) 28, 119, 209
MseI TTAA 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 194
PceI AGGCCT 1 cut(s) 129
PfeI GAWTC 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 245
SgeI CNNG 7 cut(s) 39, 44, 123, 142, 149, 206, 264
Sse9I AATT 3 cut(s) 117, 173, 219
SseBI AGGCCT 1 cut(s) 129
SspMI CTAG 1 cut(s) 137
StuI AGGCCT 1 cut(s) 129
TaaI ACNGT 1 cut(s) 64
TasI AATT 3 cut(s) 117, 173, 219
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 215
XapI RAATTY 1 cut(s) 219
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.