RchiOBHm_Chr5g0081901

Branched-chain-amino-acid aminotransferase-like protein 3

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
87840438 .. 87850241
9804 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 168 bp
ATGCCTCAGTTTGACAAAATACCAAGTGGCTGCACGGCTAAGAGAGTTTTGGCGCTTGCAGAAGGCCTGCTGAAGGAGGGTAAGCTTCAGGGAGTGAGAGTCGAAAATGTGACTGTTGAGGAAGGGAAGAAGGCAGATGAGATAATGCTTATCGGCAGTGGAGTTTAG

Protein Analysis

55

Amino Acids

5.85

Weight (kDa)

6.17

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025048)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0081901
rosa_rugosa Rorug04G0425400
rosa_samantha Rh5DG051300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 71, 92
AfiI CCNNNNNNNGG 1 cut(s) 73
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 56
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 16
BshFI GGCC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 73
BsnI GGCC 1 cut(s) 66
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 115
BstC8I GCNNGC 2 cut(s) 57, 68
BstDEI CTNAG 2 cut(s) 6, 39
BstENI CCTNNNNNAGG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 66
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 163
Cac8I GCNNGC 2 cut(s) 57, 68
CfoI GCGC 1 cut(s) 55
CviJI RGCY 4 cut(s) 30, 38, 66, 85
CviKI_1 RGCY 4 cut(s) 30, 38, 66, 85
DdeI CTNAG 2 cut(s) 6, 39
Eco147I AGGCCT 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 71, 92
EcoNI CCTNNNNNAGG 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
GlaI GCGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 1 cut(s) 66
HhaI GCGC 1 cut(s) 55
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 99
HpyAV CCTTC 4 cut(s) 56, 67, 116, 124
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 33, 59
HpyF3I CTNAG 2 cut(s) 6, 39
HspAI GCGC 1 cut(s) 53
LpnPI CCDG 2 cut(s) 74, 80
Lsp1109I GCAGC 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 109
MboII GAAGA 1 cut(s) 139
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 3 cut(s) 15, 70, 112
NmuCI GTSAC 1 cut(s) 109
PceI AGGCCT 1 cut(s) 66
PkrI GCNGC 1 cut(s) 32
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
SatI GCNGC 1 cut(s) 31
SchI GAGTC 1 cut(s) 108
SetI ASST 1 cut(s) 87
SgeI CNNG 5 cut(s) 36, 46, 68, 79, 101
SseBI AGGCCT 1 cut(s) 66
StuI AGGCCT 1 cut(s) 66
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 102
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 109
TspRI CASTG 1 cut(s) 163
XagI CCTNNNNNAGG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.