Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0025048

Physical Location & Seq

Genomic Coordinates Forward (+)

4321443 .. 4321724

Gene Structure 282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG051300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGAGGCTGAAGAAGAAGGTGCCTTTACAGCGATTTGGCTGGATGGTGAGGGATTTATTGCGGAAGGGCCTAACATGAATGTGGCTTTTGTTAGAAAAGACAAGGAACTTCTGATGCCTCAGTTTGACAAAATACCAAGTGGTTGCACGGCTAAGAGAGTTTTGGCGCTTGCAGAAGGCCTGGTGAAGGAGGGTAAGCTTCGGGGACTGAGAGTCAAAAATGTGACTGTTGAGGAAGGGAAGAAGGCAGATGAGATGATGCTTATCGGCAGTGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0019438 GO:0019752 GO:0032787 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046482 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

93

Amino Acids

10.11

Weight (kDa)

5.01

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	2 - 92	9.5e-15	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0081901
rosa_rugosa	Rorug04G0425400
rosa_samantha	Rh5DG051300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AciI	CCGC	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	187
AhdI	GACNNNNNGTC	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
AoxI	GGCC	2 cut(s)	68, 178
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	59, 196
BanI	GGYRCC	1 cut(s)	20
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	182
BmeRI	GACNNNNNGTC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	2 cut(s)	105, 249
BsaBI	GATNNNNATC	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	134, 200
BshFI	GGCC	2 cut(s)	70, 180
BshNI	GGYRCC	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	70, 180
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	2 cut(s)	70, 180
BspCNI	CTCAG	2 cut(s)	133, 201
BspLI	GGNNCC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	3 cut(s)	120, 153, 209
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	70, 180
BtsCI	GGATG	1 cut(s)	49
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	68
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	7 cut(s)	8, 40, 70, 86, 152, 180, 199
CviKI_1	RGCY	7 cut(s)	8, 40, 70, 86, 152, 180, 199
DdeI	CTNAG	3 cut(s)	120, 153, 209
DriI	GACNNNNNGTC	1 cut(s)	212
Eam1105I	GACNNNNNGTC	1 cut(s)	212
Eco147I	AGGCCT	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	30
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	79
FaiI	YATR	1 cut(s)	77
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	1 cut(s)	75
FokI	GGATG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	70, 180
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	213
HphI	GGTGA	2 cut(s)	59, 196
Hpy188I	TCNGA	1 cut(s)	114
HpyAV	CCTTC	6 cut(s)	11, 59, 170, 181, 230, 238
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	147, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	3 cut(s)	120, 153, 209
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	167
LpnPI	CCDG	3 cut(s)	26, 167, 194
LweI	GCATC	2 cut(s)	105, 249
MaeIII	GTNAC	1 cut(s)	223
MboII	GAAGA	3 cut(s)	23, 26, 253
MlyI	GAGTC	1 cut(s)	222
MnlI	CCTC	4 cut(s)	43, 129, 184, 226
MslI	CAYNNNNRTG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	29
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	180
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	2 cut(s)	22, 201
SfaNI	GCATC	2 cut(s)	105, 249
SgeI	CNNG	9 cut(s)	53, 88, 115, 150, 160, 182, 193, 194, 215
SmiMI	CAYNNNNRTG	1 cut(s)	80
SseBI	AGGCCT	1 cut(s)	180
SsiI	CCGC	1 cut(s)	62
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	229
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.