Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0026710

Physical Location & Seq

Genomic Coordinates Forward (+)

89305506 .. 89305664

Gene Structure 159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGAATTTAAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTAATGCGTCTATTTATGGCAAAGGTCCTGGGTATGTAACTGCTCAAGACATCATTTTACCACCCTATGTAGAAATTGTTGATAATACACAGCATATAGCTAACCTAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006354 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0031976 GO:0031984 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_A_CTD RNA_pol_A_bac RNA_pol_L

Protein Analysis

52

Amino Acids

5.78

Weight (kDa)

6.52

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_A_bac	PF01000	1 - 52	1.3e-06	RNA polymerase Rpb3/RpoA insert domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00740
rosa_chinensis	RchiOBHm_Chr5g0083591

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	4
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	71
CseI	GACGC	1 cut(s)	42
CviJI	RGCY	1 cut(s)	146
CviKI_1	RGCY	1 cut(s)	146
DraI	TTTAAA	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	73
FaiI	YATR	7 cut(s)	39, 63, 81, 114, 141, 143, 157
FspEI	CC	9 cut(s)	24, 48, 54, 60, 61, 87, 120, 123, 124
HgaI	GACGC	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	92
LpnPI	CCDG	2 cut(s)	60, 87
MaeIII	GTNAC	1 cut(s)	82
MluCI	AATT	3 cut(s)	4, 15, 120
MseI	TTAA	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	71
PspPPI	RGGWCCY	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	8
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	3 cut(s)	73, 148, 153
SgeI	CNNG	4 cut(s)	57, 86, 87, 104
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	3 cut(s)	4, 15, 120
StyD4I	CCNGG	1 cut(s)	73
TasI	AATT	3 cut(s)	4, 15, 120
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.