RchiOBHm_Chr4g0387201

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0024975
Physical Location & Seq
Reverse (-)
2389249 .. 2391367
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGGATGACCACCCTGCTGGCATGGTTTCTGCTTCTATGGATGGAACTATAAAGATCTGGGAAGATCGCAAGTCACAACCACTTTTAGTACTGAGACCCTATGATGGCCCTCCTGTTCAATCACCTACATTTGTGACAGCTCCAAAGAGGCCTGATCACATCATACATATAAAAGTGGGACCACCTAATCAGGAAGAGAAGATCTGGTCCTCAGAGAGTGAAGAAGGCTGGCTGCTTAACGAGCTGAGACATGGAAATGTACTCAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

90

Amino Acids

10.17

Weight (kDa)

5.73

Isoelectric Point (pI)

78.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024975)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0387201
rosa_multiflora Rmu_sc0000013.1_g000012 Rmu_sc0010693.1_g000013

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 90, 261
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 2 cut(s) 140, 244
AluI AGCT 2 cut(s) 140, 244
Alw26I GTCTC 2 cut(s) 88, 241
AoxI GGCC 2 cut(s) 106, 149
ApeKI GCWGC 1 cut(s) 232
AspS9I GGNCC 3 cut(s) 107, 179, 207
AsuHPI GGTGA 1 cut(s) 114
AvaII GGWCC 2 cut(s) 179, 207
BbvI GCAGC 1 cut(s) 219
BccI CCATC 2 cut(s) 35, 98
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 88, 241
BglII AGATCT 2 cut(s) 54, 201
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
BmcAI AGTACT 1 cut(s) 90
Bme18I GGWCC 2 cut(s) 179, 207
BmgT120I GGNCC 3 cut(s) 107, 179, 207
BmiI GGNNCC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 104
BseGI GGATG 2 cut(s) 10, 46
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 3 cut(s) 83, 225, 236
BseXI GCAGC 1 cut(s) 219
BshFI GGCC 2 cut(s) 108, 151
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 2 cut(s) 88, 241
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 2 cut(s) 108, 151
Bso31I GGTCTC 1 cut(s) 88
Bsp143I GATC 4 cut(s) 54, 64, 154, 201
BspANI GGCC 2 cut(s) 108, 151
BspCNI CTCAG 3 cut(s) 84, 224, 237
BspLI GGNNCC 1 cut(s) 180
BspTNI GGTCTC 1 cut(s) 88
BssMI GATC 4 cut(s) 54, 64, 154, 201
Bst6I CTCTTC 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 19, 230
BstDEI CTNAG 4 cut(s) 92, 211, 245, 263
BstF5I GGATG 2 cut(s) 10, 46
BstKTI GATC 4 cut(s) 57, 67, 157, 204
BstMAI GTCTC 2 cut(s) 88, 241
BstMBI GATC 4 cut(s) 54, 64, 154, 201
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 219
BstX2I RGATCY 2 cut(s) 54, 201
BstXI CCANNNNNNTGG 1 cut(s) 17
BstYI RGATCY 2 cut(s) 54, 201
BsuRI GGCC 2 cut(s) 108, 151
BtsCI GGATG 2 cut(s) 10, 46
Cac8I GCNNGC 2 cut(s) 19, 230
Cfr13I GGNCC 3 cut(s) 107, 179, 207
Csp6I GTAC 2 cut(s) 89, 260
CviAII CATG 2 cut(s) 22, 251
CviJI RGCY 6 cut(s) 108, 140, 151, 228, 232, 244
CviKI_1 RGCY 6 cut(s) 108, 140, 151, 228, 232, 244
CviQI GTAC 2 cut(s) 89, 260
DdeI CTNAG 4 cut(s) 92, 211, 245, 263
DpnI GATC 4 cut(s) 56, 66, 156, 203
DpnII GATC 4 cut(s) 54, 64, 154, 201
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco147I AGGCCT 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 179, 207
FaeI CATG 2 cut(s) 25, 254
FaiI YATR 8 cut(s) 23, 38, 50, 102, 164, 168, 170, 252
FaqI GGGAC 1 cut(s) 192
FatI CATG 2 cut(s) 21, 250
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 233
FokI GGATG 2 cut(s) 17, 53
Fsp4HI GCNGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 233
HaeIII GGCC 2 cut(s) 108, 151
Hin1II CATG 2 cut(s) 25, 254
HphI GGTGA 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 214, 266
Hpy188III TCNNGA 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 4 cut(s) 92, 211, 245, 263
Hsp92II CATG 2 cut(s) 25, 254
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 4 cut(s) 54, 64, 154, 201
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 8 cut(s) 3, 27, 43, 126, 165, 176, 190, 214
Lsp1109I GCAGC 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 72, 133
MalI GATC 4 cut(s) 56, 66, 156, 203
MboI GATC 4 cut(s) 54, 64, 154, 201
MboII GAAGA 4 cut(s) 74, 206, 211, 233
MflI RGATCY 2 cut(s) 54, 201
MnlI CCTC 3 cut(s) 120, 141, 220
MseI TTAA 2 cut(s) 237, 271
MslI CAYNNNNRTG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeII GATC 4 cut(s) 54, 64, 154, 201
NlaIII CATG 2 cut(s) 25, 254
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 72, 133
PceI AGGCCT 1 cut(s) 151
PkrI GCNGC 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 3 cut(s) 107, 179, 207
PsuI RGATCY 2 cut(s) 54, 201
RsaI GTAC 2 cut(s) 90, 261
RsaNI GTAC 2 cut(s) 89, 260
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 2 cut(s) 237, 271
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 4 cut(s) 54, 64, 154, 201
Sau96I GGNCC 3 cut(s) 107, 179, 207
ScaI AGTACT 1 cut(s) 90
SetI ASST 5 cut(s) 127, 142, 187, 246, 271
SinI GGWCC 2 cut(s) 179, 207
SmiMI CAYNNNNRTG 1 cut(s) 255
SseBI AGGCCT 1 cut(s) 151
StuI AGGCCT 1 cut(s) 151
TatI WGTACW 2 cut(s) 88, 259
Tru1I TTAA 2 cut(s) 237, 271
Tru9I TTAA 2 cut(s) 237, 271
TseFI GTSAC 2 cut(s) 72, 133
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 2 cut(s) 72, 133
VpaK11BI GGWCC 2 cut(s) 179, 207
ZrmI AGTACT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.