Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000013.1

Orthogroup ID

OG0024975

Physical Location & Seq

Genomic Coordinates Reverse (-)

43417 .. 44812

Gene Structure 1396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000013.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atggatgaccacttggctggtttctgctgtctttgttacataaagatcttggaagatcgcaagtcacaaccacttttagtactgagaccctatgatggccttcctgtttatttgtctacatttgtgacagctcccaacaggcctgatcacatcatacttataacattgggcccacttaatcaggaagtgaagatctggtcctcagcgagtgaagaaggctggctgcttcccagtgatgctgagtcatggaaatgtacccagaccttagagttaaagggctctgctcaaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ge1_WD40

Protein Analysis

97

Amino Acids

10.89

Weight (kDa)

4.94

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024975)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0387201
rosa_multiflora	Rmu_sc0000013.1_g000012 Rmu_sc0010693.1_g000013

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	116
AfaI	GTAC	2 cut(s)	81, 256
AfiI	CCNNNNNNNGG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	79
AoxI	GGCC	3 cut(s)	97, 140, 169
ApaI	GGGCCC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	223
AspS9I	GGNCC	3 cut(s)	169, 170, 198
AvaII	GGWCC	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	173
BanII	GRGCYC	2 cut(s)	173, 281
BbvCI	CCTCAGC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	1 cut(s)	89
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	79
BglII	AGATCT	2 cut(s)	45, 192
BisI	GCNGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	225
BmcAI	AGTACT	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	3 cut(s)	169, 170, 198
BmiI	GGNNCC	1 cut(s)	171
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	202
BsaI	GGTCTC	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	3 cut(s)	74, 216, 231
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	210
BshFI	GGCC	3 cut(s)	99, 142, 171
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	99, 142, 171
Bso31I	GGTCTC	1 cut(s)	79
Bsp120I	GGGCCC	1 cut(s)	169
Bsp1286I	GDGCHC	2 cut(s)	173, 281
Bsp143I	GATC	4 cut(s)	45, 55, 145, 192
BspANI	GGCC	3 cut(s)	99, 142, 171
BspCNI	CTCAG	3 cut(s)	75, 215, 232
BspLI	GGNNCC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	231
BssMI	GATC	4 cut(s)	45, 55, 145, 192
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	4 cut(s)	83, 202, 240, 265
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	48, 58, 148, 195
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	4 cut(s)	45, 55, 145, 192
BstSLI	GKGCMC	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	45, 192
BstXI	CCANNNNNNTGG	1 cut(s)	17
BstYI	RGATCY	2 cut(s)	45, 192
BsuRI	GGCC	3 cut(s)	99, 142, 171
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	221
Cfr13I	GGNCC	3 cut(s)	169, 170, 198
Csp6I	GTAC	2 cut(s)	80, 255
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	8 cut(s)	17, 99, 131, 142, 171, 219, 223, 279
CviKI_1	RGCY	8 cut(s)	17, 99, 131, 142, 171, 219, 223, 279
CviQI	GTAC	2 cut(s)	80, 255
DdeI	CTNAG	4 cut(s)	83, 202, 240, 265
DpnI	GATC	4 cut(s)	47, 57, 147, 194
DpnII	GATC	4 cut(s)	45, 55, 145, 192
Eco147I	AGGCCT	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	173, 281
Eco31I	GGTCTC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	198
EcoT38I	GRGCYC	2 cut(s)	173, 281
FaeI	CATG	1 cut(s)	249
FaiI	YATR	5 cut(s)	41, 93, 155, 161, 247
FatI	CATG	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	224
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	173, 281
Fsp4HI	GCNGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	224
HaeIII	GGCC	3 cut(s)	99, 142, 171
Hin1II	CATG	1 cut(s)	249
HinfI	GANTC	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	110, 209
HpyF3I	CTNAG	4 cut(s)	83, 202, 240, 265
Hsp92II	CATG	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	45, 55, 145, 192
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	9 cut(s)	3, 117, 124, 156, 167, 181, 205, 244, 272
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	1 cut(s)	226
MaeIII	GTNAC	3 cut(s)	35, 63, 124
MalI	GATC	4 cut(s)	47, 57, 147, 194
MboI	GATC	4 cut(s)	45, 55, 145, 192
MboII	GAAGA	3 cut(s)	65, 202, 224
MflI	RGATCY	2 cut(s)	45, 192
MhlI	GDGCHC	2 cut(s)	173, 281
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	1 cut(s)	211
MseI	TTAA	2 cut(s)	177, 272
MslI	CAYNNNNRTG	1 cut(s)	250
NdeII	GATC	4 cut(s)	45, 55, 145, 192
NlaIII	CATG	1 cut(s)	249
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	2 cut(s)	63, 124
PceI	AGGCCT	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	225
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PsiI	TTATAA	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	171
PspOMI	GGGCCC	1 cut(s)	169
PspPI	GGNCC	3 cut(s)	169, 170, 198
PsuI	RGATCY	2 cut(s)	45, 192
RsaI	GTAC	2 cut(s)	81, 256
RsaNI	GTAC	2 cut(s)	80, 255
RseI	CAYNNNNRTG	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	177, 272
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	4 cut(s)	45, 55, 145, 192
Sau96I	GGNCC	3 cut(s)	169, 170, 198
ScaI	AGTACT	1 cut(s)	81
SchI	GAGTC	1 cut(s)	251
SduI	GDGCHC	2 cut(s)	173, 281
SetI	ASST	3 cut(s)	133, 266, 292
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	250
SseBI	AGGCCT	1 cut(s)	142
StuI	AGGCCT	1 cut(s)	142
TatI	WGTACW	1 cut(s)	79
Tru1I	TTAA	2 cut(s)	177, 272
Tru9I	TTAA	2 cut(s)	177, 272
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	2 cut(s)	63, 124
TseI	GCWGC	1 cut(s)	223
Tsp45I	GTSAC	2 cut(s)	63, 124
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	116
ZrmI	AGTACT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.