RchiOBHm_Chr4g0388691

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0030053
Physical Location & Seq
Reverse (-)
3931868 .. 3934175
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 933 bp
ATGATCAGAGGTGTCAGTGCCGACCAAGTTACTGAGTGGCAAGATAAGTACTGGGAGGCTGCAGATGAGTTAGGCCACAAGGAGCTTGGTTCAGAAAAATCGGGACGTGACGCATACGGAAATGTTTGGCGTGAACATTGGAAAGAAGCTATGTGGCAGAATTGTGGGCTTGTGCATATGGAGAAATCTGCAGACAAGTGGGGAAAGAATGGTAGAGGTGATGAATGGCAAGAGAAATGGTGGGAGCATTATGATGCTTCAGGCCAAGCAGAGAAATGGGCTCATAAGTGGTGTACAATTGATCCAAACACACCAGTTGATGTTGGTCATGCTCACATTTGGCATGAAAGGTGGGGTGAAACGTATGATGGACATGGTGGGAGTAATAAATACACTGACAAATGGGCTGAACGCTGCGAGGGAGATGGTTGGTCAAAATGGGGTGACAAATGGGATGAACATTTTGATCCAAATGGCCATGGTGTGAAGCAGGGTGAAACATGGTGGGAAGGCAAGTATGGAGAACGGTGGAACAAAACATGGGGCGAGGGCCACAATGGTTCAGGGTGGATTCACAAGTATGGGAAGAGCAGCAGCGGTGATCACTGGGATACACATCAGCAGGAAGACACGTGGTATGAGAGATTCCCTCACTTCGGTTTCTATCACTGCTTTGAAAACTCAGTTCAGCTCAGGGAAGTTCGAAAGCCATCAGAGATTGCATCGCAGATGTCTTCAGAGACTTCATCCGAGATGCCTTCATCAGAGATGCTTTCAGAGACTTCATCAGAGATGCCTCCAGAGACTTCATCTGAGATACCTTCAGAGACTTCATCGGAGATACCTTCAGAAATTCCATCGGACATGTCATCAGACGGTCCATTGGAGTTGCCCTCAGAGCTTCTATTGAAGAGACAATCAGAGGTGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

35.93

Weight (kDa)

4.96

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030053)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0388691
rosa_multiflora Rmu_sc0010392.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 597
AclWI GGATC 2 cut(s) 296, 461
AcoI YGGCCR 1 cut(s) 475
AcsI RAATTY 1 cut(s) 852
AcuI CTGAAG 4 cut(s) 243, 720, 807, 831
AcvI CACGTG 1 cut(s) 633
AfaI GTAC 2 cut(s) 50, 295
AfiI CCNNNNNNNGG 1 cut(s) 656
AflIII ACRYGT 2 cut(s) 630, 864
AgsI TTSAA 2 cut(s) 677, 910
AjiI CACGTC 1 cut(s) 107
AluBI AGCT 4 cut(s) 85, 149, 691, 901
AluI AGCT 4 cut(s) 85, 149, 691, 901
Alw26I GTCTC 5 cut(s) 734, 773, 797, 821, 907
AlwI GGATC 2 cut(s) 296, 461
AoxI GGCC 5 cut(s) 73, 262, 475, 550, 927
ApeKI GCWGC 4 cut(s) 59, 414, 591, 594
ApoI RAATTY 1 cut(s) 852
AspS9I GGNCC 2 cut(s) 550, 878
AsuHPI GGTGA 5 cut(s) 230, 368, 455, 506, 611
AsuII TTCGAA 1 cut(s) 703
AvaII GGWCC 1 cut(s) 878
BalI TGGCCA 1 cut(s) 477
BanII GRGCYC 1 cut(s) 283
BbrPI CACGTG 1 cut(s) 633
BbsI GAAGAC 2 cut(s) 633, 726
BbvI GCAGC 4 cut(s) 46, 401, 603, 606
BccI CCATC 4 cut(s) 362, 419, 718, 865
BciVI GTATCC 1 cut(s) 604
BclI TGATCA 2 cut(s) 3, 601
BcoDI GTCTC 5 cut(s) 734, 773, 797, 821, 907
BfmI CTRYAG 2 cut(s) 60, 189
BfuI GTATCC 1 cut(s) 604
BisI GCNGC 4 cut(s) 60, 415, 592, 595
BlsI GCNGC 4 cut(s) 61, 416, 593, 596
BmcAI AGTACT 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 878
BmgBI CACGTC 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 550, 878
BmrI ACTGGG 2 cut(s) 61, 616
BmsI GCATC 5 cut(s) 244, 731, 744, 759, 783
BmuI ACTGGG 2 cut(s) 61, 616
BpiI GAAGAC 2 cut(s) 633, 726
BplI GAGNNNNNCTC 4 cut(s) 634, 666, 878, 910
BpmI CTGGAG 1 cut(s) 783
Bpu10I CCTNAGC 1 cut(s) 692
Bpu14I TTCGAA 1 cut(s) 703
BsaAI YACGTR 1 cut(s) 633
BsaBI GATNNNNATC 1 cut(s) 615
BsaJI CCNNGG 1 cut(s) 478
Bsc4I CCNNNNNNNGG 1 cut(s) 656
Bse1I ACTGG 3 cut(s) 56, 314, 611
Bse8I GATNNNNATC 1 cut(s) 615
BseDI CCNNGG 1 cut(s) 478
BseGI GGATG 2 cut(s) 460, 746
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 1 cut(s) 656
BseMII CTCAG 5 cut(s) 24, 696, 706, 804, 909
BseNI ACTGG 3 cut(s) 56, 314, 611
BseXI GCAGC 4 cut(s) 46, 401, 603, 606
BshFI GGCC 5 cut(s) 75, 264, 477, 552, 929
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 5 cut(s) 734, 773, 797, 821, 907
BsmFI GGGAC 1 cut(s) 117
BsnI GGCC 5 cut(s) 75, 264, 477, 552, 929
Bsp119I TTCGAA 1 cut(s) 703
Bsp1286I GDGCHC 1 cut(s) 283
Bsp1407I TGTACA 1 cut(s) 293
Bsp143I GATC 4 cut(s) 3, 301, 466, 601
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 1 cut(s) 597
BspANI GGCC 5 cut(s) 75, 264, 477, 552, 929
BspCNI CTCAG 5 cut(s) 25, 695, 705, 805, 908
BspMAI CTGCAG 2 cut(s) 64, 193
BspPI GGATC 2 cut(s) 296, 461
BspQI GCTCTTC 1 cut(s) 581
BspT104I TTCGAA 1 cut(s) 703
BsrGI TGTACA 1 cut(s) 293
BsrI ACTGG 3 cut(s) 56, 314, 611
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 4 cut(s) 3, 301, 466, 601
BssT1I CCWWGG 1 cut(s) 478
Bst4CI ACNGT 2 cut(s) 528, 878
Bst6I CTCTTC 2 cut(s) 581, 905
BstAUI TGTACA 1 cut(s) 293
BstBAI YACGTR 1 cut(s) 633
BstBI TTCGAA 1 cut(s) 703
BstDEI CTNAG 5 cut(s) 33, 682, 692, 813, 895
BstDSI CCRYGG 1 cut(s) 478
BstF5I GGATG 2 cut(s) 460, 746
BstKTI GATC 4 cut(s) 6, 304, 469, 604
BstMAI GTCTC 5 cut(s) 734, 773, 797, 821, 907
BstMBI GATC 4 cut(s) 3, 301, 466, 601
BstMWI GCNNNNNNNGC 1 cut(s) 898
BstNSI RCATGY 1 cut(s) 868
BstSFI CTRYAG 2 cut(s) 60, 189
BstV1I GCAGC 4 cut(s) 46, 401, 603, 606
BstV2I GAAGAC 2 cut(s) 633, 726
BsuI GTATCC 1 cut(s) 604
BsuRI GGCC 5 cut(s) 75, 264, 477, 552, 929
BtgI CCRYGG 1 cut(s) 478
BtgZI GCGATG 1 cut(s) 708
BtrI CACGTC 1 cut(s) 107
BtsCI GGATG 2 cut(s) 460, 746
BtsI GCAGTG 1 cut(s) 667
BtsIMutI CAGTG 4 cut(s) 22, 393, 604, 667
Cfr13I GGNCC 2 cut(s) 550, 878
CseI GACGC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 49, 294
CviAII CATG 7 cut(s) 329, 344, 374, 479, 501, 540, 865
CviQI GTAC 2 cut(s) 49, 294
DdeI CTNAG 5 cut(s) 33, 682, 692, 813, 895
DpnI GATC 4 cut(s) 5, 303, 468, 603
DpnII GATC 4 cut(s) 3, 301, 466, 601
EaeI YGGCCR 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 581, 905
EarI CTCTTC 2 cut(s) 581, 905
Eco130I CCWWGG 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 878
Eco57I CTGAAG 4 cut(s) 243, 720, 807, 831
Eco72I CACGTG 1 cut(s) 633
EcoT14I CCWWGG 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 7 cut(s) 332, 347, 377, 482, 504, 543, 868
FaqI GGGAC 1 cut(s) 117
FatI CATG 7 cut(s) 328, 343, 373, 478, 500, 539, 864
FauNDI CATATG 1 cut(s) 177
FbaI TGATCA 2 cut(s) 3, 601
Fnu4HI GCNGC 4 cut(s) 60, 415, 592, 595
FokI GGATG 2 cut(s) 467, 733
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 4 cut(s) 60, 415, 592, 595
GluI GCNGC 4 cut(s) 60, 415, 592, 595
GsuI CTGGAG 1 cut(s) 783
HaeIII GGCC 5 cut(s) 75, 264, 477, 552, 929
HgaI GACGC 1 cut(s) 119
Hin1II CATG 7 cut(s) 332, 347, 377, 482, 504, 543, 868
HinfI GANTC 2 cut(s) 571, 645
HphI GGTGA 5 cut(s) 230, 368, 455, 506, 611
Hpy166II GTNNAC 2 cut(s) 134, 294
Hpy188III TCNNGA 2 cut(s) 102, 800
Hpy8I GTNNAC 2 cut(s) 134, 294
HpyAV CCTTC 4 cut(s) 503, 768, 831, 855
HpyCH4III ACNGT 2 cut(s) 528, 878
HpyCH4IV ACGT 3 cut(s) 106, 362, 632
HpyCH4V TGCA 4 cut(s) 62, 175, 191, 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 898
HpyF3I CTNAG 5 cut(s) 33, 682, 692, 813, 895
HpySE526I ACGT 3 cut(s) 106, 362, 632
Hsp92II CATG 7 cut(s) 332, 347, 377, 482, 504, 543, 868
Ksp22I TGATCA 2 cut(s) 3, 601
Kzo9I GATC 4 cut(s) 3, 301, 466, 601
LguI GCTCTTC 1 cut(s) 581
LmnI GCTCC 2 cut(s) 82, 244
LpnPI CCDG 9 cut(s) 37, 246, 327, 476, 549, 592, 608, 679, 813
Lsp1109I GCAGC 4 cut(s) 46, 401, 603, 606
LweI GCATC 5 cut(s) 244, 731, 744, 759, 783
MaeII ACGT 3 cut(s) 106, 362, 632
MaeIII GTNAC 3 cut(s) 28, 107, 443
MalI GATC 4 cut(s) 5, 303, 468, 603
MboI GATC 4 cut(s) 3, 301, 466, 601
MboII GAAGA 4 cut(s) 598, 638, 726, 922
MfeI CAATTG 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 477
MluCI AATT 3 cut(s) 160, 297, 852
MluNI TGGCCA 1 cut(s) 477
MnlI CCTC 8 cut(s) 49, 209, 412, 541, 660, 807, 904, 916
Mox20I TGGCCA 1 cut(s) 477
MscI TGGCCA 1 cut(s) 477
MslI CAYNNNNRTG 2 cut(s) 252, 579
Msp20I TGGCCA 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 597
MunI CAATTG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 898
NcoI CCATGG 1 cut(s) 478
NdeI CATATG 1 cut(s) 177
NdeII GATC 4 cut(s) 3, 301, 466, 601
NlaIII CATG 7 cut(s) 332, 347, 377, 482, 504, 543, 868
NmuCI GTSAC 2 cut(s) 107, 443
NspI RCATGY 1 cut(s) 868
NspV TTCGAA 1 cut(s) 703
PciI ACATGT 1 cut(s) 864
PciSI GCTCTTC 1 cut(s) 581
PfeI GAWTC 2 cut(s) 571, 645
PkrI GCNGC 4 cut(s) 61, 416, 593, 596
PmaCI CACGTG 1 cut(s) 633
PmlI CACGTG 1 cut(s) 633
Ppu21I YACGTR 1 cut(s) 633
PscI ACATGT 1 cut(s) 864
PspCI CACGTG 1 cut(s) 633
PspPI GGNCC 2 cut(s) 550, 878
PstI CTGCAG 2 cut(s) 64, 193
RsaI GTAC 2 cut(s) 50, 295
RsaNI GTAC 2 cut(s) 49, 294
RseI CAYNNNNRTG 2 cut(s) 252, 579
SapI GCTCTTC 1 cut(s) 581
SatI GCNGC 4 cut(s) 60, 415, 592, 595
Sau3AI GATC 4 cut(s) 3, 301, 466, 601
Sau96I GGNCC 2 cut(s) 550, 878
ScaI AGTACT 1 cut(s) 50
SduI GDGCHC 1 cut(s) 283
SfaNI GCATC 5 cut(s) 244, 731, 744, 759, 783
SfcI CTRYAG 2 cut(s) 60, 189
SfuI TTCGAA 1 cut(s) 703
SinI GGWCC 1 cut(s) 878
SmiMI CAYNNNNRTG 2 cut(s) 252, 579
Sse9I AATT 3 cut(s) 160, 297, 852
SsiI CCGC 1 cut(s) 597
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 2 cut(s) 528, 878
TaiI ACGT 3 cut(s) 109, 365, 635
TaqI TCGA 1 cut(s) 703
TasI AATT 3 cut(s) 160, 297, 852
TatI WGTACW 2 cut(s) 48, 293
TfiI GAWTC 2 cut(s) 571, 645
TscAI CASTG 4 cut(s) 22, 400, 611, 674
TseFI GTSAC 2 cut(s) 107, 443
TseI GCWGC 4 cut(s) 59, 414, 591, 594
Tsp45I GTSAC 2 cut(s) 107, 443
TspDTI ATGAA 8 cut(s) 237, 360, 471, 735, 750, 774, 798, 822
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 4 cut(s) 22, 400, 611, 674
VpaK11BI GGWCC 1 cut(s) 878
XapI RAATTY 1 cut(s) 852
XceI RCATGY 1 cut(s) 868
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
ZrmI AGTACT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.