RchiOBHm_Chr4g0391491

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0030013
Physical Location & Seq
Reverse (-)
6924871 .. 6926353
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 849 bp
ATGATCAAATCAAATGGACTCAAGTGTCTAACCATTCTAAACATACTACTTGTCAGGAGGGCTTCTTTCATCTATGTGAACATGTTCTCAGGGGAGGCAACAACACACTTACCAACTGCAACACAAACGCCAAGAGGAGGAGTGCATCTCTTTATCACCCTTCTATTTCTGATTCCCTTTAGTTTGTTGTCGTGCATTGTTAGCTTACCTTATTGTTCTTTTTGGGTTGGGAGGGTTATTATCATCCACATTTTTTCTCTAATCTCTCAAGTATCTGTACAGATTCTAGCAGATGCAATGGGACTGGGGAAGACTGTGATGACAATTGCTCTAATACTTGCAAGACCAAGGAGAGGAAACTCTGATAGTATTGAAATTACAAAGAAGAGAAAGATAGATCAAGATACAATGACAACATTAAAGCCAAAGGGAGGCACTCTTGTTGTCTGTCCTAGCGTACTCAAGTGGAAGGATGCGCTTGAAACCCCCCATTCAGAGTCGAAAAGTATTTCTACTTTGGTCCATGTTTGGGGGAGAACCATCAGCCCCGTGGTGATTTCAGAACAAGATGTGGTCTTGACTGACTATGATTTTCTGACTTACGATTATTATTTGTATCGCGAGAACAGTGTCTTACACCAGGTTGACTGGTATAGGGTGGTGCTCGATGATGCTGATACTCTTGGATCGTCAGGGGCAAAAGAAGCTGCTAAGGCTGCTTCTATGTTGTCCTCTCATTGCCGATGGTGGTTGACAGGAACCCCTCTTAAGGTCTGCCTTTTGTTCCTGTACTCGATAAAGATGCAAGGACAGAGGATAAGTGAAGCATATATGAGTTTTAACAATTGA

Protein Analysis

282

Amino Acids

31.57

Weight (kDa)

9.08

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 92 - 257 3.7e-23 SNF2-related domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0030013)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0391491 RchiOBHm_Chr4g0391751

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 24
AccII CGCG 1 cut(s) 621
AclWI GGATC 1 cut(s) 694
AfaI GTAC 3 cut(s) 279, 459, 791
AfiI CCNNNNNNNGG 5 cut(s) 137, 353, 431, 529, 769
AflII CTTAAG 1 cut(s) 767
AflIII ACRYGT 1 cut(s) 81
AgsI TTSAA 2 cut(s) 374, 482
AjnI CCWGG 1 cut(s) 639
AluBI AGCT 2 cut(s) 204, 707
AluI AGCT 2 cut(s) 204, 707
Alw21I GWGCWC 1 cut(s) 666
AlwI GGATC 1 cut(s) 694
ApeKI GCWGC 2 cut(s) 707, 716
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 1 cut(s) 520
AsuHPI GGTGA 2 cut(s) 148, 565
AvaII GGWCC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 666
BbvI GCAGC 2 cut(s) 694, 703
BccI CCATC 2 cut(s) 548, 738
BcgI CGANNNNNNTGC 2 cut(s) 784, 818
BciT130I CCWGG 1 cut(s) 641
BclI TGATCA 1 cut(s) 3
BfaI CTAG 2 cut(s) 287, 453
BfrI CTTAAG 1 cut(s) 767
BisI GCNGC 2 cut(s) 708, 717
BlsI GCNGC 2 cut(s) 709, 718
Bme1390I CCNGG 1 cut(s) 641
Bme18I GGWCC 1 cut(s) 520
BmgT120I GGNCC 1 cut(s) 520
BmiI GGNNCC 1 cut(s) 760
BmrFI CCNGG 1 cut(s) 641
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 5 cut(s) 154, 283, 463, 661, 792
BmuI ACTGGG 1 cut(s) 314
BpiI GAAGAC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 132, 164
Bpu10I CCTNAGC 1 cut(s) 711
BpuEI CTTGAG 3 cut(s) 5, 252, 446
BsaJI CCNNGG 2 cut(s) 347, 549
Bsc4I CCNNNNNNNGG 5 cut(s) 137, 353, 431, 529, 769
Bse1I ACTGG 2 cut(s) 309, 653
Bse3DI GCAATG 2 cut(s) 303, 736
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 2 cut(s) 347, 549
BseGI GGATG 2 cut(s) 243, 478
BseLI CCNNNNNNNGG 5 cut(s) 137, 353, 431, 529, 769
BseMI GCAATG 2 cut(s) 303, 736
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 2 cut(s) 309, 653
BseRI GAGGAG 2 cut(s) 150, 153
BseXI GCAGC 2 cut(s) 694, 703
Bsh1236I CGCG 1 cut(s) 621
BsiHKAI GWGCWC 1 cut(s) 666
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 5 cut(s) 137, 353, 431, 529, 769
BsmFI GGGAC 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 666
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 3 cut(s) 3, 397, 686
Bsp68I TCGCGA 1 cut(s) 621
BspCNI CTCAG 1 cut(s) 101
BspFNI CGCG 1 cut(s) 621
BspLI GGNNCC 1 cut(s) 760
BspPI GGATC 1 cut(s) 694
BspTI CTTAAG 1 cut(s) 767
BsrDI GCAATG 2 cut(s) 303, 736
BsrGI TGTACA 1 cut(s) 277
BsrI ACTGG 2 cut(s) 309, 653
BssECI CCNNGG 2 cut(s) 347, 549
BssMI GATC 3 cut(s) 3, 397, 686
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 2 cut(s) 316, 629
Bst6I CTCTTC 1 cut(s) 380
BstAFI CTTAAG 1 cut(s) 767
BstAUI TGTACA 1 cut(s) 277
BstDEI CTNAG 2 cut(s) 88, 711
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 2 cut(s) 243, 478
BstFNI CGCG 1 cut(s) 621
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 3 cut(s) 6, 400, 689
BstMBI GATC 3 cut(s) 3, 397, 686
BstMWI GCNNNNNNNGC 4 cut(s) 201, 704, 713, 716
BstNI CCWGG 1 cut(s) 641
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 639
BstUI CGCG 1 cut(s) 621
BstV1I GCAGC 2 cut(s) 694, 703
BstV2I GAAGAC 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 549
BtsCI GGATG 2 cut(s) 243, 478
BtsIMutI CAGTG 1 cut(s) 634
BtuMI TCGCGA 1 cut(s) 621
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 1 cut(s) 520
CsiI ACCWGGT 1 cut(s) 639
Csp6I GTAC 3 cut(s) 278, 458, 790
CviAII CATG 2 cut(s) 82, 524
CviJI RGCY 6 cut(s) 62, 204, 424, 546, 707, 716
CviKI_1 RGCY 6 cut(s) 62, 204, 424, 546, 707, 716
CviQI GTAC 3 cut(s) 278, 458, 790
DdeI CTNAG 2 cut(s) 88, 711
DpnI GATC 3 cut(s) 5, 399, 688
DpnII GATC 3 cut(s) 3, 397, 686
DrdI GACNNNNNNGTC 1 cut(s) 24
DseDI GACNNNNNNGTC 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
Eco130I CCWWGG 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 639
EcoT14I CCWWGG 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 2 cut(s) 85, 527
FaqI GGGAC 1 cut(s) 315
FatI CATG 2 cut(s) 81, 523
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 708, 717
FokI GGATG 2 cut(s) 230, 485
Fsp4HI GCNGC 2 cut(s) 708, 717
FspBI CTAG 2 cut(s) 287, 453
GlaI GCGC 1 cut(s) 477
GluI GCNGC 2 cut(s) 708, 717
HhaI GCGC 1 cut(s) 478
Hin1II CATG 2 cut(s) 85, 527
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HincII GTYRAC 2 cut(s) 646, 753
HindII GTYRAC 2 cut(s) 646, 753
HinfI GANTC 4 cut(s) 18, 172, 283, 497
HphI GGTGA 2 cut(s) 148, 565
Hpy166II GTNNAC 3 cut(s) 79, 646, 753
Hpy188I TCNGA 5 cut(s) 171, 364, 496, 562, 597
Hpy188III TCNNGA 4 cut(s) 55, 401, 577, 620
Hpy8I GTNNAC 3 cut(s) 79, 646, 753
HpyAV CCTTC 2 cut(s) 170, 463
HpyCH4III ACNGT 2 cut(s) 316, 629
HpyCH4V TGCA 6 cut(s) 119, 145, 195, 296, 341, 805
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 704, 713, 716
HpyF3I CTNAG 2 cut(s) 88, 711
Hsp92II CATG 2 cut(s) 85, 527
HspAI GCGC 1 cut(s) 476
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 397, 686
LpnPI CCDG 9 cut(s) 40, 75, 290, 626, 634, 653, 678, 741, 800
Lsp1109I GCAGC 2 cut(s) 694, 703
LweI GCATC 5 cut(s) 154, 283, 463, 661, 792
MabI ACCWGGT 1 cut(s) 639
MaeI CTAG 2 cut(s) 287, 453
MalI GATC 3 cut(s) 5, 399, 688
MboI GATC 3 cut(s) 3, 397, 686
MboII GAAGA 2 cut(s) 322, 397
MfeI CAATTG 2 cut(s) 324, 844
MhlI GDGCHC 1 cut(s) 666
MluCI AATT 3 cut(s) 324, 375, 844
MlyI GAGTC 2 cut(s) 12, 506
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 3 cut(s) 419, 768, 840
MslI CAYNNNNRTG 1 cut(s) 74
MspCI CTTAAG 1 cut(s) 767
MspR9I CCNGG 1 cut(s) 641
MunI CAATTG 2 cut(s) 324, 844
MvaI CCWGG 1 cut(s) 641
MvnI CGCG 1 cut(s) 621
MwoI GCNNNNNNNGC 4 cut(s) 201, 704, 713, 716
NdeII GATC 3 cut(s) 3, 397, 686
NlaIII CATG 2 cut(s) 85, 527
NlaIV GGNNCC 1 cut(s) 760
NruI TCGCGA 1 cut(s) 621
NspI RCATGY 1 cut(s) 85
PciI ACATGT 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 2 cut(s) 172, 283
PkrI GCNGC 2 cut(s) 709, 718
PleI GAGTC 2 cut(s) 12, 505
PpsI GAGTC 2 cut(s) 12, 505
PscI ACATGT 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 639
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 1 cut(s) 760
PspPI GGNCC 1 cut(s) 520
RruI TCGCGA 1 cut(s) 621
RsaI GTAC 3 cut(s) 279, 459, 791
RsaNI GTAC 3 cut(s) 278, 458, 790
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 3 cut(s) 419, 768, 840
SatI GCNGC 2 cut(s) 708, 717
Sau3AI GATC 3 cut(s) 3, 397, 686
Sau96I GGNCC 1 cut(s) 520
SchI GAGTC 2 cut(s) 12, 506
ScrFI CCNGG 1 cut(s) 641
SduI GDGCHC 1 cut(s) 666
SetI ASST 5 cut(s) 206, 211, 645, 709, 774
SexAI ACCWGGT 1 cut(s) 639
SfaNI GCATC 5 cut(s) 154, 283, 463, 661, 792
SinI GGWCC 1 cut(s) 520
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 4 cut(s) 20, 267, 461, 767
SmoI CTYRAG 4 cut(s) 20, 267, 461, 767
Sse9I AATT 3 cut(s) 324, 375, 844
SspMI CTAG 2 cut(s) 287, 453
StyD4I CCNGG 1 cut(s) 639
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 2 cut(s) 316, 629
TaqI TCGA 3 cut(s) 500, 666, 794
TasI AATT 3 cut(s) 324, 375, 844
TatI WGTACW 2 cut(s) 277, 789
TfiI GAWTC 2 cut(s) 172, 283
Tru1I TTAA 3 cut(s) 419, 768, 840
Tru9I TTAA 3 cut(s) 419, 768, 840
TscAI CASTG 1 cut(s) 634
TseI GCWGC 2 cut(s) 707, 716
TspDTI ATGAA 1 cut(s) 58
TspRI CASTG 1 cut(s) 634
Vha464I CTTAAG 1 cut(s) 767
VpaK11BI GGWCC 1 cut(s) 520
XceI RCATGY 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 2 cut(s) 287, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.