RchiOBHm_Chr4g0391751

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0030013
Physical Location & Seq
Reverse (-)
7102146 .. 7104539
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36456

Sequence Viewer

Length: 708 bp
ATGATCAAATCAAATGGACTCAAGTGTCTAACCATTCTAAACATACTACTTGTCAGGAGGGCTTCTTTCATCTATGTGAACATGTTCTCAGGGGAGGCAACAACACACTTACCAACTGCAACACAAACGCCAAGAGGAGGAATTCTAGCAGATGCAATGGGACTGGGGAAGACTGTGATGACAATTGCTCTAATACTTGCAAGACCAAGGAGAGGAAACTCTGATAGTATTGAAATTACAAAGAAGAGAAAGATAGATCAAGATACAATGACAACATTAAAGCCAAAGGGAGGCACTCTTGTTGTCTGTCCTAGCGTACTCAAGTTGAAGGATGCGCTTGAAACCCATTCAGACTCGAAAAGTATTTCTACTTTGGTCCATGTTTGGGGGAGAACCATCAGCCCCGTGGTGATTTCAGAACAAGATGTGGTCTTGACTGACTATGATTTTCTGACTTACGATTATTATTCGTATGGCGAGAACAGTGTCTTACACCAGGTTGACTGGTATAGGGTGGTGCTCAATGATGCTGATACTCTTGGATCTTCAGGGGCAAAAGAAGCTGCTAAGGCTGCTTCTATGTTGTCCTCTCATTGCCGATGGTGGTTGACAGGAACCCCTCTTAAGATTGATTTGGAAGACATCTACAGCCTCTTATGTTTCTTGCATGTTGAGCCATGGAGCAACTGGGCATGCTGGAAGAAATGA

Protein Analysis

235

Amino Acids

26.17

Weight (kDa)

8.53

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 42 - 235 3.4e-31 SNF2-related domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030013)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0391491 RchiOBHm_Chr4g0391751

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 24
AclWI GGATC 1 cut(s) 550
AcsI RAATTY 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 4 cut(s) 137, 212, 290, 385
AflII CTTAAG 1 cut(s) 623
AflIII ACRYGT 1 cut(s) 81
AgsI TTSAA 3 cut(s) 233, 328, 341
AjnI CCWGG 1 cut(s) 495
AluBI AGCT 1 cut(s) 563
AluI AGCT 1 cut(s) 563
Alw21I GWGCWC 1 cut(s) 522
AlwI GGATC 1 cut(s) 550
ApeKI GCWGC 2 cut(s) 563, 572
ApoI RAATTY 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 1 cut(s) 376
BbsI GAAGAC 2 cut(s) 176, 645
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 2 cut(s) 550, 559
BccI CCATC 2 cut(s) 404, 594
BciT130I CCWGG 1 cut(s) 497
BclI TGATCA 1 cut(s) 3
BfaI CTAG 2 cut(s) 146, 312
BfmI CTRYAG 1 cut(s) 646
BfrI CTTAAG 1 cut(s) 623
BisI GCNGC 2 cut(s) 564, 573
BlsI GCNGC 2 cut(s) 565, 574
Bme1390I CCNGG 1 cut(s) 497
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 1 cut(s) 616
BmrFI CCNGG 1 cut(s) 497
BmrI ACTGGG 2 cut(s) 173, 697
BmsI GCATC 3 cut(s) 142, 322, 517
BmuI ACTGGG 2 cut(s) 173, 697
BpiI GAAGAC 2 cut(s) 176, 645
Bpu10I CCTNAGC 1 cut(s) 567
BpuEI CTTGAG 2 cut(s) 5, 305
BsaJI CCNNGG 3 cut(s) 206, 405, 677
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 212, 290, 385
Bse1I ACTGG 3 cut(s) 168, 509, 692
Bse3DI GCAATG 2 cut(s) 162, 592
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 3 cut(s) 206, 405, 677
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 4 cut(s) 137, 212, 290, 385
BseMI GCAATG 2 cut(s) 162, 592
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 3 cut(s) 168, 509, 692
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 550, 559
BsiHKAI GWGCWC 1 cut(s) 522
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 4 cut(s) 137, 212, 290, 385
BsmFI GGGAC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 3 cut(s) 3, 256, 542
Bsp19I CCATGG 1 cut(s) 677
BspCNI CTCAG 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 616
BspPI GGATC 1 cut(s) 550
BspTI CTTAAG 1 cut(s) 623
BsrDI GCAATG 2 cut(s) 162, 592
BsrI ACTGG 3 cut(s) 168, 509, 692
BssECI CCNNGG 3 cut(s) 206, 405, 677
BssMI GATC 3 cut(s) 3, 256, 542
BssT1I CCWWGG 2 cut(s) 206, 677
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 2 cut(s) 175, 485
Bst6I CTCTTC 1 cut(s) 239
BstAFI CTTAAG 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 694
BstDEI CTNAG 2 cut(s) 88, 567
BstDSI CCRYGG 2 cut(s) 405, 677
BstF5I GGATG 1 cut(s) 337
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 3 cut(s) 6, 259, 545
BstMBI GATC 3 cut(s) 3, 256, 542
BstMWI GCNNNNNNNGC 4 cut(s) 560, 569, 572, 673
BstNI CCWGG 1 cut(s) 497
BstNSI RCATGY 3 cut(s) 85, 671, 696
BstSCI CCNGG 1 cut(s) 495
BstSFI CTRYAG 1 cut(s) 646
BstV1I GCAGC 2 cut(s) 550, 559
BstV2I GAAGAC 2 cut(s) 176, 645
BstX2I RGATCY 1 cut(s) 542
BstYI RGATCY 1 cut(s) 542
BtgI CCRYGG 2 cut(s) 405, 677
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 490
Cac8I GCNNGC 1 cut(s) 694
CfoI GCGC 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 376
CsiI ACCWGGT 1 cut(s) 495
Csp6I GTAC 1 cut(s) 317
CviAII CATG 5 cut(s) 82, 380, 668, 678, 693
CviJI RGCY 7 cut(s) 62, 283, 402, 563, 572, 651, 676
CviKI_1 RGCY 7 cut(s) 62, 283, 402, 563, 572, 651, 676
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 2 cut(s) 88, 567
DpnI GATC 3 cut(s) 5, 258, 544
DpnII GATC 3 cut(s) 3, 256, 542
DrdI GACNNNNNNGTC 1 cut(s) 24
DseDI GACNNNNNNGTC 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 2 cut(s) 206, 677
Eco47I GGWCC 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 531
EcoRI GAATTC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 495
EcoT14I CCWWGG 2 cut(s) 206, 677
ErhI CCWWGG 2 cut(s) 206, 677
FaeI CATG 5 cut(s) 85, 383, 671, 681, 696
FaqI GGGAC 1 cut(s) 174
FatI CATG 5 cut(s) 81, 379, 667, 677, 692
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 564, 573
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 2 cut(s) 564, 573
FspBI CTAG 2 cut(s) 146, 312
GlaI GCGC 1 cut(s) 336
GluI GCNGC 2 cut(s) 564, 573
HhaI GCGC 1 cut(s) 337
Hin1II CATG 5 cut(s) 85, 383, 671, 681, 696
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HincII GTYRAC 2 cut(s) 502, 609
HindII GTYRAC 2 cut(s) 502, 609
HinfI GANTC 2 cut(s) 18, 353
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 79, 502, 609
Hpy188I TCNGA 4 cut(s) 223, 352, 418, 453
Hpy188III TCNNGA 3 cut(s) 55, 260, 433
Hpy8I GTNNAC 3 cut(s) 79, 502, 609
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 2 cut(s) 175, 485
HpyCH4V TGCA 4 cut(s) 119, 155, 200, 667
HpyF10VI GCNNNNNNNGC 4 cut(s) 560, 569, 572, 673
HpyF3I CTNAG 2 cut(s) 88, 567
Hsp92II CATG 5 cut(s) 85, 383, 671, 681, 696
HspAI GCGC 1 cut(s) 335
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 256, 542
LmnI GCTCC 1 cut(s) 681
Lsp1109I GCAGC 2 cut(s) 550, 559
LweI GCATC 3 cut(s) 142, 322, 517
MabI ACCWGGT 1 cut(s) 495
MaeI CTAG 2 cut(s) 146, 312
MalI GATC 3 cut(s) 5, 258, 544
MboI GATC 3 cut(s) 3, 256, 542
MboII GAAGA 4 cut(s) 181, 256, 537, 650
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 1 cut(s) 542
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 3 cut(s) 141, 183, 234
MlyI GAGTC 2 cut(s) 12, 347
MnlI CCTC 9 cut(s) 51, 88, 128, 131, 206, 284, 598, 630, 662
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 2 cut(s) 278, 624
MslI CAYNNNNRTG 1 cut(s) 74
MspCI CTTAAG 1 cut(s) 623
MspR9I CCNGG 1 cut(s) 497
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 497
MwoI GCNNNNNNNGC 4 cut(s) 560, 569, 572, 673
NcoI CCATGG 1 cut(s) 677
NdeII GATC 3 cut(s) 3, 256, 542
NlaIII CATG 5 cut(s) 85, 383, 671, 681, 696
NlaIV GGNNCC 1 cut(s) 616
NspI RCATGY 3 cut(s) 85, 671, 696
PaeI GCATGC 1 cut(s) 696
PciI ACATGT 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 565, 574
PleI GAGTC 2 cut(s) 12, 347
PpsI GAGTC 2 cut(s) 12, 347
PscI ACATGT 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 495
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 616
PspPI GGNCC 1 cut(s) 376
PsuI RGATCY 1 cut(s) 542
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 2 cut(s) 278, 624
SatI GCNGC 2 cut(s) 564, 573
Sau3AI GATC 3 cut(s) 3, 256, 542
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 2 cut(s) 12, 347
ScrFI CCNGG 1 cut(s) 497
SduI GDGCHC 1 cut(s) 522
SetI ASST 2 cut(s) 501, 565
SexAI ACCWGGT 1 cut(s) 495
SfaNI GCATC 3 cut(s) 142, 322, 517
SfcI CTRYAG 1 cut(s) 646
SinI GGWCC 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 3 cut(s) 20, 320, 623
SmoI CTYRAG 3 cut(s) 20, 320, 623
SphI GCATGC 1 cut(s) 696
Sse9I AATT 3 cut(s) 141, 183, 234
SspMI CTAG 2 cut(s) 146, 312
StyD4I CCNGG 1 cut(s) 495
StyI CCWWGG 2 cut(s) 206, 677
TaaI ACNGT 2 cut(s) 175, 485
TaqI TCGA 1 cut(s) 356
TasI AATT 3 cut(s) 141, 183, 234
Tru1I TTAA 2 cut(s) 278, 624
Tru9I TTAA 2 cut(s) 278, 624
TscAI CASTG 1 cut(s) 490
TseI GCWGC 2 cut(s) 563, 572
TspDTI ATGAA 1 cut(s) 58
TspRI CASTG 1 cut(s) 490
Vha464I CTTAAG 1 cut(s) 623
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 1 cut(s) 141
XceI RCATGY 3 cut(s) 85, 671, 696
XcmI CCANNNNNNNNNTGG 2 cut(s) 403, 684
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 2 cut(s) 146, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.