Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021397

Physical Location & Seq

Genomic Coordinates Reverse (-)

11551788 .. 11553739

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGAACCCCACTTCCTCAATATATCAGTTTATGATCAAATGGTTCAAAGTGGAGCTGCTTTTGGCCGACAATTCCAGAAGGATGACCCTGTGCTGGACATGGTTGACGAAAAGATCCTCAAGCGCGGGCGAAATCGAGCTGCCCAAGGTGCAAAGTGCTCCGGCTGGAAGAGCTGGTGGATGGATCCTTGCTCTCAATGGGGGAATGCCAATATCTTGAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006029 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0015012 GO:0019538 GO:0030166 GO:0030201 GO:0034645 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0050650 GO:0050654 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

75

Amino Acids

8.6

Weight (kDa)

8.71

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021397)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395711
rosa_multiflora	Rmu_co8443505.1_g000001
rosa_samantha	Rh4BG394800 Rh4CG409700 Rh4DG053300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	126
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	3 cut(s)	109, 179, 192
AcoI	YGGCCR	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	47, 220
AloI	GAACNNNNNNTCC	1 cut(s)	29
AluBI	AGCT	4 cut(s)	56, 140, 174, 223
AluI	AGCT	4 cut(s)	56, 140, 174, 223
Alw21I	GWGCWC	1 cut(s)	161
AlwI	GGATC	3 cut(s)	109, 179, 192
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	56, 140
AspLEI	GCGC	1 cut(s)	126
BamHI	GGATCC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	43, 127
BccI	CCATC	1 cut(s)	175
BclI	TGATCA	1 cut(s)	34
BisI	GCNGC	2 cut(s)	57, 141
BlsI	GCNGC	2 cut(s)	58, 142
BmiI	GGNNCC	2 cut(s)	6, 186
BpuEI	CTTGAG	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	2 cut(s)	88, 186
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	43, 127
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	34, 114, 184
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	6, 186
BspPI	GGATC	3 cut(s)	109, 179, 192
BspQI	GCTCTTC	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	3 cut(s)	34, 114, 184
BssT1I	CCWWGG	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	88, 186
BstFNI	CGCG	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	3 cut(s)	37, 117, 187
BstMBI	GATC	3 cut(s)	34, 114, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 171
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	43, 127
BstX2I	RGATCY	2 cut(s)	114, 184
BstYI	RGATCY	2 cut(s)	114, 184
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	88, 186
Cac8I	GCNNGC	1 cut(s)	128
CfoI	GCGC	1 cut(s)	126
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	6 cut(s)	56, 66, 140, 165, 174, 223
CviKI_1	RGCY	6 cut(s)	56, 66, 140, 165, 174, 223
DpnI	GATC	3 cut(s)	36, 116, 186
DpnII	GATC	3 cut(s)	34, 114, 184
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	145
FaeI	CATG	1 cut(s)	103
FaiI	YATR	3 cut(s)	23, 33, 101
FatI	CATG	1 cut(s)	99
FauI	CCCGC	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	57, 141
FokI	GGATG	2 cut(s)	95, 193
Fsp4HI	GCNGC	2 cut(s)	57, 141
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	57, 141
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	162
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	76, 217
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 171
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	34, 114, 184
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	2 cut(s)	53, 164
LpnPI	CCDG	6 cut(s)	80, 89, 102, 151, 160, 175
Lsp1109I	GCAGC	2 cut(s)	43, 127
MalI	GATC	3 cut(s)	36, 116, 186
MboI	GATC	3 cut(s)	34, 114, 184
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	2 cut(s)	114, 184
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	1 cut(s)	71
MnlI	CCTC	2 cut(s)	26, 128
MspI	CCGG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	211
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	149, 171
NdeII	GATC	3 cut(s)	34, 114, 184
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	6, 186
PciSI	GCTCTTC	1 cut(s)	164
PctI	GAATGC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	58, 142
PspN4I	GGNNCC	2 cut(s)	6, 186
PsuI	RGATCY	2 cut(s)	114, 184
SapI	GCTCTTC	1 cut(s)	164
SatI	GCNGC	2 cut(s)	57, 141
Sau3AI	GATC	3 cut(s)	34, 114, 184
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	5 cut(s)	58, 142, 151, 176, 225
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	145
TaqI	TCGA	1 cut(s)	136
TasI	AATT	1 cut(s)	71
TseI	GCWGC	2 cut(s)	56, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.