RchiOBHm_Chr4g0397891

Arginine

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
14326468 .. 14332651
6184 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 192 bp
ATGAACAGGCTGCATCAGTATTGGAGAATGTGGATTATGAAAAGTAGTAATTTAGAGCCTACAAAGAAGGAAGGTAAAACAAGTGAGAGAGTGACGGCCAGGTCTGCCACCAAGGATAAGATTTTACTTCCTAGCTCTCCGACGACTTCTCAGCAATGGAACCCAACTCCACTTGTAGCCTTGAAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

7.27

Weight (kDa)

10.45

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024953)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0397891
rosa_roxburghii Rroxscaffold_5G00342630 Rroxscaffold_5G00342810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 100
AcoI YGGCCR 1 cut(s) 96
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 1 cut(s) 98
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 10
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 100
BfaI CTAG 1 cut(s) 132
BglI GCCNNNNNGGC 1 cut(s) 185
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 100
BmsI GCATC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 164
BshFI GGCC 1 cut(s) 98
BsnI GGCC 1 cut(s) 98
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 104, 185
BstNI CCWGG 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 98
BsuRI GGCC 1 cut(s) 98
CviJI RGCY 6 cut(s) 10, 58, 98, 135, 179, 188
CviKI_1 RGCY 6 cut(s) 10, 58, 98, 135, 179, 188
DdeI CTNAG 1 cut(s) 150
DrdI GACNNNNNNGTC 1 cut(s) 100
DseDI GACNNNNNNGTC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaiI YATR 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 1 cut(s) 132
GluI GCNGC 1 cut(s) 11
HaeIII GGCC 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 141
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 61, 65, 178
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 185
HpyF3I CTNAG 1 cut(s) 150
LpnPI CCDG 2 cut(s) 85, 112
LweI GCATC 1 cut(s) 22
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 91
MluCI AATT 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 164
MseI TTAA 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 100
MvaI CCWGG 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 104, 185
NlaIV GGNNCC 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 190
SatI GCNGC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 100
SetI ASST 3 cut(s) 76, 104, 137
SfaNI GCATC 1 cut(s) 22
SgeI CNNG 7 cut(s) 19, 93, 111, 112, 124, 144, 185
Sse9I AATT 1 cut(s) 49
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 98
StyI CCWWGG 1 cut(s) 111
TasI AATT 1 cut(s) 49
Tru1I TTAA 1 cut(s) 190
Tru9I TTAA 1 cut(s) 190
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 17, 53
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.