Rroxscaffold_5G00342810

Arginine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0024953
Physical Location & Seq
Forward (+)
11933397 .. 11936171
2775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342810.1

Sequence Viewer

Length: 669 bp
ATGTATTCTGCAATAGTCGCAAGTTGGGATGAATTGGTCCAGGAATTTGTGAAAGCTGGCAGTGAGGAGAACAAGACAATCCTTTCCAAGGTCGACGACAATGTTGGGTGGCTTGATGAATATGGTGGAAGCTTCTCTGAATCAACTCAAATTGTTCCTGAGATCCGTGTGAATTCAGAATCTTTAATTGTGAGCTGGGACTTCCAATCCGTGCTGAGGGGTCCTAATGCCCTTTCCACAAATTTAGACTGGGAAACCCAATTGAGAAAAGCTTTTGAAGCTGCAAAAGGTTTGGAGTATCTCCAAAAACCCAATGTGTGTACGTTTGTTTTCATTTGGTTGAAAAGTAGTAATTTAGAGCCTACAAAGAAGGAAGATAAAACAAGGGAGAGATTGACGGCCGGGTCTGCCACCAAGGATAAGATTTTACTTTCTAGCTTGCCGACGACTTCTCAGCAACAGAACCCAACTCCACTTGTTACTGCCTTGATGGCTTCAGCTGAACAAATTGGTGCTGCTACCTTTCACTTTCCTGGGCACAACAGAGGTCGAGCTGCACCAAATTTTGTAGCTGAACTTATTGGTTCAAAACCATTTCTTCATGACTTACTGGGGGACATACAGTTGAATCCCCAGATATTAGAAGTTAAAAAGAGTAACAGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OKR_DC_1 OKR_DC_1_C

Protein Analysis

222

Amino Acids

24.6

Weight (kDa)

5.32

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024953)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0397891
rosa_roxburghii Rroxscaffold_5G00342630 Rroxscaffold_5G00342810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 403
AccI GTMKAC 1 cut(s) 93
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 4 cut(s) 44, 172, 241, 562
AcuI CTGAAG 1 cut(s) 480
AfaI GTAC 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 88, 216
AgsI TTSAA 4 cut(s) 278, 343, 588, 628
AjnI CCWGG 2 cut(s) 39, 532
AluBI AGCT 9 cut(s) 56, 132, 195, 272, 281, 438, 500, 554, 572
AluI AGCT 9 cut(s) 56, 132, 195, 272, 281, 438, 500, 554, 572
AlwI GGATC 1 cut(s) 157
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 3 cut(s) 281, 515, 554
ApoI RAATTY 4 cut(s) 44, 172, 241, 562
AspS9I GGNCC 2 cut(s) 37, 221
AsuC2I CCSGG 1 cut(s) 403
AvaII GGWCC 2 cut(s) 37, 221
BaeGI GKGCMC 1 cut(s) 540
BbvCI CCTCAGC 1 cut(s) 215
BbvI GCAGC 3 cut(s) 268, 502, 541
BccI CCATC 1 cut(s) 484
BceAI ACGGC 1 cut(s) 414
BciT130I CCWGG 2 cut(s) 41, 534
BcnI CCSGG 1 cut(s) 403
BfaI CTAG 1 cut(s) 435
BglI GCCNNNNNGGC 1 cut(s) 491
BisI GCNGC 3 cut(s) 282, 516, 555
BlsI GCNGC 3 cut(s) 283, 517, 556
Bme1390I CCNGG 3 cut(s) 41, 403, 534
Bme18I GGWCC 2 cut(s) 37, 221
BmgT120I GGNCC 2 cut(s) 37, 221
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 3 cut(s) 41, 403, 534
BmrI ACTGGG 2 cut(s) 259, 620
BmuI ACTGGG 2 cut(s) 259, 620
Bpu10I CCTNAGC 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 403
BsaJI CCNNGG 3 cut(s) 87, 414, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 216
Bse1I ACTGG 2 cut(s) 254, 615
BseBI CCWGG 2 cut(s) 41, 534
BseDI CCNNGG 3 cut(s) 87, 414, 533
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 88, 216
BseMII CTCAG 3 cut(s) 150, 206, 467
BseNI ACTGG 2 cut(s) 254, 615
BseRI GAGGAG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 540
BseX3I CGGCCG 1 cut(s) 399
BseXI GCAGC 3 cut(s) 268, 502, 541
BseYI CCCAGC 1 cut(s) 195
BsgI GTGCAG 1 cut(s) 540
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 1 cut(s) 401
BsiEI CGRYCG 1 cut(s) 402
BsiSI CCGG 1 cut(s) 402
BslFI GGGAC 2 cut(s) 212, 629
BslI CCNNNNNNNGG 2 cut(s) 88, 216
BsmFI GGGAC 2 cut(s) 212, 629
BsnI GGCC 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 1 cut(s) 162
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 3 cut(s) 151, 207, 466
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 254, 615
BssECI CCNNGG 3 cut(s) 87, 414, 533
BssMI GATC 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 87, 414
Bst2UI CCWGG 2 cut(s) 41, 534
Bst4CI ACNGT 1 cut(s) 624
BstC8I GCNNGC 2 cut(s) 58, 440
BstDEI CTNAG 3 cut(s) 159, 215, 453
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 165
BstMBI GATC 1 cut(s) 162
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 4 cut(s) 17, 278, 407, 491
BstNI CCWGG 2 cut(s) 41, 534
BstNSI RCATGY 1 cut(s) 667
BstSCI CCNGG 3 cut(s) 39, 401, 532
BstSLI GKGCMC 1 cut(s) 540
BstV1I GCAGC 3 cut(s) 268, 502, 541
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BstZI CGGCCG 1 cut(s) 399
BsuRI GGCC 1 cut(s) 401
BtsCI GGATG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 58, 440
CciI TCATGA 1 cut(s) 601
Cfr13I GGNCC 2 cut(s) 37, 221
Csp6I GTAC 1 cut(s) 321
CviAII CATG 2 cut(s) 602, 664
CviQI GTAC 1 cut(s) 321
DdeI CTNAG 3 cut(s) 159, 215, 453
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
DrdI GACNNNNNNGTC 1 cut(s) 403
DseDI GACNNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 399
EagI CGGCCG 1 cut(s) 399
EclXI CGGCCG 1 cut(s) 399
Eco130I CCWWGG 2 cut(s) 87, 414
Eco47I GGWCC 2 cut(s) 37, 221
Eco52I CGGCCG 1 cut(s) 399
Eco57I CTGAAG 1 cut(s) 480
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 39, 532
EcoT14I CCWWGG 2 cut(s) 87, 414
ErhI CCWWGG 2 cut(s) 87, 414
FaeI CATG 2 cut(s) 605, 667
FaiI YATR 4 cut(s) 123, 603, 620, 665
FaqI GGGAC 2 cut(s) 212, 629
FatI CATG 2 cut(s) 601, 663
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 282, 516, 555
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 282, 516, 555
FspBI CTAG 1 cut(s) 435
GluI GCNGC 3 cut(s) 282, 516, 555
GsaI CCCAGC 1 cut(s) 199
HaeIII GGCC 1 cut(s) 401
HapII CCGG 1 cut(s) 402
Hin1II CATG 2 cut(s) 605, 667
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 2 cut(s) 130, 270
HinfI GANTC 3 cut(s) 140, 179, 628
HpaII CCGG 1 cut(s) 402
Hpy166II GTNNAC 2 cut(s) 94, 321
Hpy188I TCNGA 2 cut(s) 139, 178
Hpy188III TCNNGA 2 cut(s) 158, 602
Hpy8I GTNNAC 2 cut(s) 94, 321
Hpy99I CGWCG 2 cut(s) 98, 448
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 1 cut(s) 624
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 3 cut(s) 11, 284, 557
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 278, 407, 491
HpyF3I CTNAG 3 cut(s) 159, 215, 453
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 2 cut(s) 605, 667
Kzo9I GATC 1 cut(s) 162
Lsp1109I GCAGC 3 cut(s) 268, 502, 541
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 478, 656
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 2 cut(s) 386, 590
MfeI CAATTG 1 cut(s) 260
MflI RGATCY 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 540
MnlI CCTC 3 cut(s) 58, 210, 539
MseI TTAA 2 cut(s) 185, 648
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 3 cut(s) 41, 403, 534
MunI CAATTG 1 cut(s) 260
MvaI CCWGG 2 cut(s) 41, 534
MwoI GCNNNNNNNGC 4 cut(s) 17, 278, 407, 491
NciI CCSGG 1 cut(s) 403
NdeII GATC 1 cut(s) 162
NlaIII CATG 2 cut(s) 605, 667
NlaIV GGNNCC 1 cut(s) 222
NspI RCATGY 1 cut(s) 667
PagI TCATGA 1 cut(s) 601
PfeI GAWTC 3 cut(s) 140, 179, 628
PfoI TCCNGGA 1 cut(s) 39
PkrI GCNGC 3 cut(s) 283, 517, 556
PpuMI RGGWCCY 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 39, 532
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 2 cut(s) 39, 532
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 2 cut(s) 37, 221
PspPPI RGGWCCY 1 cut(s) 221
PsuI RGATCY 1 cut(s) 162
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
SalI GTCGAC 1 cut(s) 92
SaqAI TTAA 2 cut(s) 185, 648
SatI GCNGC 3 cut(s) 282, 516, 555
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 2 cut(s) 37, 221
ScrFI CCNGG 3 cut(s) 41, 403, 534
SduI GDGCHC 1 cut(s) 540
SinI GGWCC 2 cut(s) 37, 221
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 3 cut(s) 39, 401, 532
StyI CCWWGG 2 cut(s) 87, 414
TaaI ACNGT 1 cut(s) 624
TaiI ACGT 1 cut(s) 326
TaqI TCGA 2 cut(s) 93, 550
TfiI GAWTC 3 cut(s) 140, 179, 628
Tru1I TTAA 2 cut(s) 185, 648
Tru9I TTAA 2 cut(s) 185, 648
TscAI CASTG 1 cut(s) 67
TseI GCWGC 3 cut(s) 281, 515, 554
TspDTI ATGAA 4 cut(s) 45, 132, 322, 590
TspGWI ACGGA 2 cut(s) 155, 199
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 2 cut(s) 37, 221
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 4 cut(s) 44, 172, 241, 562
XceI RCATGY 1 cut(s) 667
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.