Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024937

Physical Location & Seq

Genomic Coordinates Forward (+)

21490200 .. 21491033

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGATTTCAAATGATTTATTTGAATCTTCTCCAGTCATGAATTGCACAGTTTGTGTTCTCTATGATGAAAAAGTTCTTTTGATGCAGCCTTACCAACCTGGTTATACTGCCCCATCACCTCCCCCTCAGTCTGACGACACTACTGTTGACATCAGTGAGGCATGGACAATCTCTGGTACCCCGTTAGATTTACGTGATCTTCGACTATTGGCAATTGAATTTGAATATGATGAGTATGCTGATACAAGTGCTAATGGAGCAGCTTTTTGCCGCTCTGGTTTTTTTATTTTTGATTTGTTCAGCTTTTCTGCAGAACGTGAAGTGGGTGGTGTTCAGGAAGTACCCGACTCCACTTCTTGTTCAGGGATATGTGATGTAATGGTAAAGTGCACCTACAGATGGATTCAAGATTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

139

Amino Acids

15.45

Weight (kDa)

4.05

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3675	PF12428	33 - 97	1.2e-09	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0402751
rosa_samantha	Rh1CG145500 Rh4CG123000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	273
AciI	CCGC	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	218
AfaI	GTAC	2 cut(s)	178, 342
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	5 cut(s)	9, 23, 218, 224, 407
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	2 cut(s)	263, 303
AluI	AGCT	2 cut(s)	263, 303
Alw21I	GWGCWC	1 cut(s)	392
Alw44I	GTGCAC	1 cut(s)	388
ApaLI	GTGCAC	1 cut(s)	388
ApeKI	GCWGC	2 cut(s)	85, 260
ApoI	RAATTY	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	72
Asp718I	GGTACC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	97, 272
BccI	CCATC	2 cut(s)	121, 393
BciT130I	CCWGG	1 cut(s)	99
BfmI	CTRYAG	2 cut(s)	309, 394
BisI	GCNGC	3 cut(s)	86, 261, 271
BlsI	GCNGC	3 cut(s)	87, 262, 272
Bme1390I	CCNGG	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	15
BsaAI	YACGTR	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	97, 272
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	399
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	271
BspCNI	CTCAG	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	49, 145
BstBAI	YACGTR	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	2 cut(s)	309, 394
BstSLI	GKGCMC	1 cut(s)	392
BstV1I	GCAGC	2 cut(s)	97, 272
BtsIMutI	CAGTG	1 cut(s)	160
CciI	TCATGA	1 cut(s)	36
CsiI	ACCWGGT	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	177, 341
CviAII	CATG	2 cut(s)	37, 162
CviJI	RGCY	3 cut(s)	88, 263, 303
CviKI_1	RGCY	3 cut(s)	88, 263, 303
CviQI	GTAC	2 cut(s)	177, 341
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	97
FaeI	CATG	2 cut(s)	40, 165
FaiI	YATR	7 cut(s)	38, 63, 105, 163, 228, 237, 370
FatI	CATG	2 cut(s)	36, 161
Fnu4HI	GCNGC	3 cut(s)	86, 261, 271
Fsp4HI	GCNGC	3 cut(s)	86, 261, 271
GluI	GCNGC	3 cut(s)	86, 261, 271
GsuI	CTGGAG	1 cut(s)	15
Hin1II	CATG	2 cut(s)	40, 165
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	3 cut(s)	23, 347, 403
HphI	GGTGA	1 cut(s)	108
Hpy166II	GTNNAC	2 cut(s)	148, 390
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	3 cut(s)	37, 335, 407
Hpy8I	GTNNAC	2 cut(s)	148, 390
HpyCH4III	ACNGT	2 cut(s)	49, 145
HpyCH4IV	ACGT	2 cut(s)	193, 316
HpyCH4V	TGCA	5 cut(s)	45, 85, 311, 390, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	2 cut(s)	193, 316
Hsp92II	CATG	2 cut(s)	40, 165
KpnI	GGTACC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	7 cut(s)	45, 84, 111, 159, 261, 320, 348
Lsp1109I	GCAGC	2 cut(s)	97, 272
LweI	GCATC	1 cut(s)	72
MabI	ACCWGGT	1 cut(s)	97
MaeII	ACGT	2 cut(s)	193, 316
MalI	GATC	1 cut(s)	198
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	18, 191
MfeI	CAATTG	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	3 cut(s)	40, 213, 218
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	3 cut(s)	129, 135, 151
MroXI	GAANNNNTTC	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	2 cut(s)	40, 165
NlaIV	GGNNCC	1 cut(s)	178
PagI	TCATGA	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	23, 403
PkrI	GCNGC	3 cut(s)	87, 262, 272
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Ppu21I	YACGTR	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	313
RsaI	GTAC	2 cut(s)	178, 342
RsaNI	GTAC	2 cut(s)	177, 341
SatI	GCNGC	3 cut(s)	86, 261, 271
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	392
SetI	ASST	7 cut(s)	100, 121, 196, 265, 305, 319, 395
SexAI	ACCWGGT	1 cut(s)	97
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	2 cut(s)	309, 394
Sse9I	AATT	3 cut(s)	40, 213, 218
SsiI	CCGC	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	49, 145
TaiI	ACGT	2 cut(s)	196, 319
TaqI	TCGA	1 cut(s)	202
TasI	AATT	3 cut(s)	40, 213, 218
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	23, 403
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	2 cut(s)	85, 260
TspDTI	ATGAA	2 cut(s)	53, 81
TspRI	CASTG	1 cut(s)	160
VneI	GTGCAC	1 cut(s)	388
XapI	RAATTY	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.