Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0024937

Physical Location & Seq

Genomic Coordinates Reverse (-)

31527832 .. 31528826

Gene Structure 995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG145500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGATTTCAAATGGTTTATTTGAATCTTCTCCAGTCATGAATTGCACAGTTTGTGTTCTCTATTATGAAAAAGTTCTTTTGATGCAGCCTTACCAACCTGGTTATACTGCCCCATCACCTCCCCCTCAGTCTGACGACACTACTGTTGACATCAGTGAGGCATGGACAATCTCTGGTATCCCGTTGGATTTACGTGATCTTCGACTATTGGCAATTGAATCTAAATATGATGAGTATGCTGATACAAGTGCTAATGGAGCAACTTTTTGCCGCTCTGGTTTTTTTATTTTTTTATTTGGTCAACTTTTCTGCAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

106

Amino Acids

11.85

Weight (kDa)

4.24

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3675	PF12428	33 - 98	7.7e-10	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0402751
rosa_samantha	Rh1CG145500 Rh4CG123000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	273
AciI	CCGC	1 cut(s)	271
AgsI	TTSAA	3 cut(s)	9, 23, 218
AjnI	CCWGG	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	99
BciVI	GTATCC	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	86, 271
BlsI	GCNGC	2 cut(s)	87, 272
Bme1390I	CCNGG	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	15
BsaAI	YACGTR	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	271
BspCNI	CTCAG	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	36
BspMAI	CTGCAG	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	49, 145
BstBAI	YACGTR	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	160
CciI	TCATGA	1 cut(s)	36
CsiI	ACCWGGT	1 cut(s)	97
CviAII	CATG	3 cut(s)	37, 162, 318
CviJI	RGCY	1 cut(s)	88
CviKI_1	RGCY	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	97
FaeI	CATG	3 cut(s)	40, 165, 321
FaiI	YATR	7 cut(s)	38, 66, 105, 163, 228, 237, 319
FatI	CATG	3 cut(s)	36, 161, 317
Fnu4HI	GCNGC	2 cut(s)	86, 271
Fsp4HI	GCNGC	2 cut(s)	86, 271
GluI	GCNGC	2 cut(s)	86, 271
GsuI	CTGGAG	1 cut(s)	15
Hin1II	CATG	3 cut(s)	40, 165, 321
HincII	GTYRAC	2 cut(s)	148, 302
HindII	GTYRAC	2 cut(s)	148, 302
HinfI	GANTC	2 cut(s)	23, 218
HphI	GGTGA	1 cut(s)	108
Hpy166II	GTNNAC	2 cut(s)	148, 302
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	2 cut(s)	148, 302
HpyCH4III	ACNGT	2 cut(s)	49, 145
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	45, 85, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	3 cut(s)	40, 165, 321
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	5 cut(s)	45, 84, 111, 159, 261
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	72
MabI	ACCWGGT	1 cut(s)	97
MaeII	ACGT	1 cut(s)	193
MalI	GATC	1 cut(s)	198
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	18, 191
MfeI	CAATTG	1 cut(s)	213
MluCI	AATT	2 cut(s)	40, 213
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	3 cut(s)	129, 135, 151
MroXI	GAANNNNTTC	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	40, 165, 321
PagI	TCATGA	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	23, 218
PkrI	GCNGC	2 cut(s)	87, 272
Ppu21I	YACGTR	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	314
SatI	GCNGC	2 cut(s)	86, 271
Sau3AI	GATC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	3 cut(s)	100, 121, 196
SexAI	ACCWGGT	1 cut(s)	97
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	310
Sse9I	AATT	2 cut(s)	40, 213
SsiI	CCGC	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	49, 145
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	202
TasI	AATT	2 cut(s)	40, 213
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	23, 218
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	53, 81
TspRI	CASTG	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.