Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030101

Physical Location & Seq

Genomic Coordinates Reverse (-)

27417650 .. 27417862

Gene Structure 213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGCAGCAAAGCATCATTCGAAGTTGGTAATGTGCCGAAAGCAACCAGGAATATCGATTGGAAGGTTGTGCAAAAAGTATGATAGTAAGTGTGTGTTGTGCGATTCTATGGTACATCCTTGCACTCTTGTTTGGATCTATGATGAGTGCAACTATGGATCGTTCCAACTTCCAAGGGCAGTGTGTCATGTGTGGAGGGGTTGGAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005686 GO:0005689 GO:0005737 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009410 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034622 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PHF5

Protein Analysis

70

Amino Acids

8.15

Weight (kDa)

9.12

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHF5	PF03660	3 - 63	2.9e-19	PHF5-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030101)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406291
rosa_rugosa	Rorug04G0067500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	143, 166
AcsI	RAATTY	1 cut(s)	205
AfaI	GTAC	1 cut(s)	114
AjnI	CCWGG	1 cut(s)	46
AlwI	GGATC	2 cut(s)	143, 166
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	205
AsuII	TTCGAA	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	48
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	22
Bpu14I	TTCGAA	1 cut(s)	20
Bsa29I	ATCGAT	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	48
BseCI	ATCGAT	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	135, 158
BspDI	ATCGAT	1 cut(s)	56
BspPI	GGATC	2 cut(s)	143, 166
BspT104I	TTCGAA	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	135, 158
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	48
BstBI	TTCGAA	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	138, 161
BstMBI	GATC	2 cut(s)	135, 158
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
Bsu15I	ATCGAT	1 cut(s)	56
BsuTUI	ATCGAT	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
ClaI	ATCGAT	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	1 cut(s)	188
CviQI	GTAC	1 cut(s)	113
DpnI	GATC	2 cut(s)	137, 160
DpnII	GATC	2 cut(s)	135, 158
Eco130I	CCWWGG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	1 cut(s)	191
FaiI	YATR	5 cut(s)	81, 110, 141, 156, 189
FatI	CATG	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	191
HinfI	GANTC	1 cut(s)	104
Hpy188I	TCNGA	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	57
HpyCH4V	TGCA	3 cut(s)	72, 123, 150
Hsp92II	CATG	1 cut(s)	191
Kzo9I	GATC	2 cut(s)	135, 158
LpnPI	CCDG	2 cut(s)	33, 60
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	22
MalI	GATC	2 cut(s)	137, 160
MboI	GATC	2 cut(s)	135, 158
MflI	RGATCY	1 cut(s)	135
MluCI	AATT	1 cut(s)	205
MmeI	TCCRAC	2 cut(s)	182, 190
MnlI	CCTC	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	135, 158
NlaIII	CATG	1 cut(s)	191
NspV	TTCGAA	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	135, 158
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	1 cut(s)	68
SfaNI	GCATC	1 cut(s)	22
SfuI	TTCGAA	1 cut(s)	20
SgeI	CNNG	6 cut(s)	59, 60, 132, 140, 186, 200
Sse9I	AATT	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	173
TaqI	TCGA	2 cut(s)	20, 56
TasI	AATT	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	104
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	1 cut(s)	186
XapI	RAATTY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.