RchiOBHm_Chr4g0409571

ACT domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
33077795 .. 33077992
198 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 198 bp
ATGGACGGGAAGTGGTGCTCCATAGTGTTGTGGGTGGTGACGAATCAGAGCTCAATGAAGGTGGATTGGGAGAGCTTGAAGGAGCAACTTCTCTCCATGTGTCTGTCTTTGTGTTTCTATAAGGTTTATCTCAATATTCAGTCCAGTGATCTCTCGCCGTTGCTAGTTTACCTTTTGAAGTTTTGGTGCTTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

7.69

Weight (kDa)

5.05

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACR10_N PF24914 2 - 34 8e-10 ACT domain-containing protein ACR10, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030068)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0409571
rosa_laevigata RLG00000002505

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 79, 178
AluBI AGCT 2 cut(s) 51, 75
AluI AGCT 2 cut(s) 51, 75
Alw21I GWGCWC 2 cut(s) 20, 53
AsuHPI GGTGA 1 cut(s) 49
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 2 cut(s) 20, 53
BceAI ACGGC 1 cut(s) 142
BfaI CTAG 2 cut(s) 164, 196
Bse1I ACTGG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 144
BsiHKAI GWGCWC 2 cut(s) 20, 53
Bsp1286I GDGCHC 2 cut(s) 20, 53
Bsp143I GATC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 144
BssMI GATC 1 cut(s) 148
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 151
CspCI CAANNNNNGTGG 2 cut(s) 42, 77
CviAII CATG 1 cut(s) 97
CviJI RGCY 2 cut(s) 51, 75
CviKI_1 RGCY 2 cut(s) 51, 75
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 53
FaeI CATG 1 cut(s) 100
FaiI YATR 3 cut(s) 23, 98, 120
FatI CATG 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 53
FspBI CTAG 2 cut(s) 164, 196
Hin1II CATG 1 cut(s) 100
HinfI GANTC 1 cut(s) 43
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 52, 73
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 2 cut(s) 23, 82
LpnPI CCDG 1 cut(s) 157
MaeI CTAG 2 cut(s) 164, 196
MaeIII GTNAC 1 cut(s) 37
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MhlI GDGCHC 2 cut(s) 20, 53
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 43
Psp124BI GAGCTC 1 cut(s) 53
SacI GAGCTC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 148
SduI GDGCHC 2 cut(s) 20, 53
SetI ASST 5 cut(s) 53, 63, 77, 126, 174
SgeI CNNG 6 cut(s) 19, 88, 109, 156, 166, 176
SspI AATATT 1 cut(s) 136
SspMI CTAG 2 cut(s) 164, 196
SstI GAGCTC 1 cut(s) 53
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 71
TspRI CASTG 1 cut(s) 151
XspI CTAG 2 cut(s) 164, 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.