RLG00000002505

ACT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0030068
Physical Location & Seq
Reverse (-)
35362321 .. 35362995
675 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002505

Sequence Viewer

Length: 504 bp
ATGACGGCGGACCACCTTCAATTATCCCTACGAGCCCGGCCTCGGTTGCGACCTCTGCAGAATCATGCTTCAATTCAGGCTTTGCATTACCAAAGGAGGGGTGTAGATTTTACGACGGACGGGAAGTGGTGCTACATAGTGTTGTGGGTGGTGGCAAATCAGAGCTCAATGAAGGTGGATTGGGAGAGCTTGAAGGAGAAGCTTCTTTCCGCGTGTCTGTGTTCGTGTTTCTATAAGATTTATCTCAATATTCAGTCTAGTGCTCCCTCACCGTCGCCGGTTTACCTTTTGAAGTTTTGGTGCTTTGACCAGAGAGGCTCACTGCATGAAGTCACTAAAGTGCTGTGTGAGCTTGAGATGCTTATTCAGAGAGCGAAAGTGATGCAACCCCAGATAGGAGAGTTTTGGACCGGTTCTTCATCACAAATTGCTTGTAAGTGTTTGTATACAAGGATTAATCCTTTGAAAATTGGTGTTTTGGTGTTATTGTTTATTATCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ACT

Protein Analysis

168

Amino Acids

19.24

Weight (kDa)

9.19

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACR10_N PF24914 35 - 72 3.6e-13 ACT domain-containing protein ACR10, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030068)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0409571
rosa_laevigata RLG00000002505

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 446
AccII CGCG 1 cut(s) 212
AciI CCGC 2 cut(s) 8, 210
AfiI CCNNNNNNNGG 3 cut(s) 42, 97, 395
AgeI ACCGGT 1 cut(s) 410
AgsI TTSAA 5 cut(s) 20, 72, 193, 292, 466
AleI CACNNNNGTG 1 cut(s) 338
AluBI AGCT 4 cut(s) 165, 189, 202, 352
AluI AGCT 4 cut(s) 165, 189, 202, 352
Alw21I GWGCWC 2 cut(s) 167, 265
AoxI GGCC 1 cut(s) 38
AseI ATTAAT 1 cut(s) 456
AsiGI ACCGGT 1 cut(s) 410
AspS9I GGNCC 2 cut(s) 10, 408
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 261
AvaII GGWCC 2 cut(s) 10, 408
BanII GRGCYC 2 cut(s) 37, 167
BarI GAAGNNNNNNTAC 2 cut(s) 116, 148
Bbv12I GWGCWC 2 cut(s) 167, 265
BceAI ACGGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BcnI CCSGG 1 cut(s) 37
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 37
Bme18I GGWCC 2 cut(s) 10, 408
BmgT120I GGNCC 2 cut(s) 10, 408
BmrFI CCNGG 1 cut(s) 37
BmsI GCATC 2 cut(s) 348, 372
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 410
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 97, 395
Bse118I RCCGGY 2 cut(s) 277, 410
BseDI CCNNGG 1 cut(s) 41
BseLI CCNNNNNNNGG 3 cut(s) 42, 97, 395
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 1 cut(s) 40
BshTI ACCGGT 1 cut(s) 410
BsiHKAI GWGCWC 2 cut(s) 167, 265
BsiSI CCGG 3 cut(s) 37, 278, 411
BslI CCNNNNNNNGG 3 cut(s) 42, 97, 395
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 3 cut(s) 37, 167, 265
BspACI CCGC 2 cut(s) 8, 210
BspANI GGCC 1 cut(s) 40
BspFNI CGCG 1 cut(s) 212
BspMAI CTGCAG 1 cut(s) 60
BsrFI RCCGGY 2 cut(s) 277, 410
BssAI RCCGGY 2 cut(s) 277, 410
BssECI CCNNGG 1 cut(s) 41
BssNAI GTATAC 1 cut(s) 447
Bst1107I GTATAC 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 273
BstFNI CGCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 4 cut(s) 46, 55, 349, 358
BstSCI CCNGG 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 56
BstUI CGCG 1 cut(s) 212
BstZ17I GTATAC 1 cut(s) 447
BsuRI GGCC 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 320
Cfr10I RCCGGY 2 cut(s) 277, 410
Cfr13I GGNCC 2 cut(s) 10, 408
CspAI ACCGGT 1 cut(s) 410
CspCI CAANNNNNGTGG 2 cut(s) 156, 191
CviAII CATG 2 cut(s) 65, 326
CviJI RGCY 8 cut(s) 35, 40, 80, 165, 189, 202, 318, 352
CviKI_1 RGCY 8 cut(s) 35, 40, 80, 165, 189, 202, 318, 352
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 165
Eco24I GRGCYC 2 cut(s) 37, 167
Eco47I GGWCC 2 cut(s) 10, 408
Eco53kI GAGCTC 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 165
EcoT38I GRGCYC 2 cut(s) 37, 167
FaeI CATG 2 cut(s) 68, 329
FaiI YATR 5 cut(s) 66, 137, 234, 327, 447
FatI CATG 2 cut(s) 64, 325
FblI GTMKAC 1 cut(s) 446
FriOI GRGCYC 2 cut(s) 37, 167
FspBI CTAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 40
HapII CCGG 3 cut(s) 37, 278, 411
Hin1II CATG 2 cut(s) 68, 329
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 1 cut(s) 61
HpaII CCGG 3 cut(s) 37, 278, 411
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 2 cut(s) 283, 447
Hpy188I TCNGA 2 cut(s) 162, 369
Hpy8I GTNNAC 2 cut(s) 283, 447
Hpy99I CGWCG 2 cut(s) 118, 277
HpyAV CCTTC 3 cut(s) 26, 166, 187
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4V TGCA 4 cut(s) 58, 85, 325, 385
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 55, 349, 358
Hsp92II CATG 2 cut(s) 68, 329
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 6 cut(s) 50, 62, 291, 323, 404, 424
LweI GCATC 2 cut(s) 348, 372
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 331
MboII GAAGA 1 cut(s) 408
MhlI GDGCHC 3 cut(s) 37, 167, 265
MluCI AATT 4 cut(s) 20, 72, 426, 468
MnlI CCTC 5 cut(s) 51, 63, 90, 277, 308
MseI TTAA 2 cut(s) 456, 502
MslI CAYNNNNRTG 1 cut(s) 338
MspI CCGG 3 cut(s) 37, 278, 411
MspR9I CCNGG 1 cut(s) 37
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 4 cut(s) 46, 55, 349, 358
NciI CCSGG 1 cut(s) 37
NlaIII CATG 2 cut(s) 68, 329
NmuCI GTSAC 1 cut(s) 331
OliI CACNNNNGTG 1 cut(s) 338
PfeI GAWTC 1 cut(s) 61
PinAI ACCGGT 1 cut(s) 410
PshBI ATTAAT 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 167
PspPI GGNCC 2 cut(s) 10, 408
PstI CTGCAG 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 338
SacI GAGCTC 1 cut(s) 167
SaqAI TTAA 2 cut(s) 456, 502
Sau96I GGNCC 2 cut(s) 10, 408
ScrFI CCNGG 1 cut(s) 37
SduI GDGCHC 3 cut(s) 37, 167, 265
SetI ASST 8 cut(s) 18, 55, 167, 177, 191, 204, 288, 354
SfaNI GCATC 2 cut(s) 348, 372
SfcI CTRYAG 1 cut(s) 56
SinI GGWCC 2 cut(s) 10, 408
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 4 cut(s) 20, 72, 426, 468
SsiI CCGC 2 cut(s) 8, 210
SspI AATATT 1 cut(s) 250
SspMI CTAG 1 cut(s) 258
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 273
TasI AATT 4 cut(s) 20, 72, 426, 468
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 2 cut(s) 456, 502
Tru9I TTAA 2 cut(s) 456, 502
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 3 cut(s) 185, 342, 408
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 327
VpaK11BI GGWCC 2 cut(s) 10, 408
VspI ATTAAT 1 cut(s) 456
XmiI GTMKAC 1 cut(s) 446
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.