RchiOBHm_Chr4g0416061

Lactoylglutathione lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0024964
Physical Location & Seq
Reverse (-)
40878977 .. 40879385
409 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGGCAGCAACGGTAGCACAAGGACTAACTGTGGATCACATTGCCAGACAATCCAACAACATAAGGCGCCTCGCCGATTTCTACATAGAGATATTTGGATTCGAGGAAGTAGAGAGCCCAAAGTTTGGGCCACTCAAGGTGATGTGGCTGATTTTACCCTCAGCTTTTACTATGCACCTTATTGAGTGCAACCCAACTGATCGGAGGAGCGGCCCGTCACTGGTAGCTGACCCGGCCGATATTCCCAGAGGCCACCATATGGTAGCTAGCCTGTCACCAGAGGCCTCTGGGAATATCGGTCGAGTCAGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase Glyoxalase_4

Protein Analysis

104

Amino Acids

11.43

Weight (kDa)

6.03

Isoelectric Point (pI)

83.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024964)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0416061
rosa_samantha Rh4AG200100
rosa_wichuraiana Rw4G016990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 66
AccB7I CCANNNNNTGG 2 cut(s) 125, 259
AccBSI CCGCTC 1 cut(s) 210
AciI CCGC 1 cut(s) 210
AclWI GGATC 1 cut(s) 42
AcoI YGGCCR 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 67
AfiI CCNNNNNNNGG 3 cut(s) 125, 220, 259
AluBI AGCT 4 cut(s) 164, 227, 266, 309
AluI AGCT 4 cut(s) 164, 227, 266, 309
AlwI GGATC 1 cut(s) 42
AoxI GGCC 5 cut(s) 128, 211, 234, 250, 282
ApeKI GCWGC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 128, 212
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 151, 267
AsuNHI GCTAGC 1 cut(s) 266
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 1 cut(s) 119
BbvCI CCTCAGC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 17
BcnI CCSGG 1 cut(s) 233
BfaI CTAG 1 cut(s) 267
BfoI RGCGCY 1 cut(s) 70
BisI GCNGC 2 cut(s) 6, 211
BlsI GCNGC 2 cut(s) 7, 212
Bme1390I CCNGG 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 128, 212
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 233
BmtI GCTAGC 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 67
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 220, 259
Bse1I ACTGG 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 39
BseLI CCNNNNNNNGG 3 cut(s) 125, 220, 259
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 220
BseX3I CGGCCG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 17
Bsh1285I CGRYCG 2 cut(s) 237, 301
BshFI GGCC 5 cut(s) 130, 213, 236, 252, 284
BshNI GGYRCC 1 cut(s) 66
BsiEI CGRYCG 2 cut(s) 237, 301
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 3 cut(s) 125, 220, 259
BsnI GGCC 5 cut(s) 130, 213, 236, 252, 284
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 2 cut(s) 34, 199
BspACI CCGC 1 cut(s) 210
BspANI GGCC 5 cut(s) 130, 213, 236, 252, 284
BspCNI CTCAG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 68
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 225
BssMI GATC 2 cut(s) 34, 199
BssNI GRCGYC 1 cut(s) 67
Bst4CI ACNGT 2 cut(s) 13, 31
BstACI GRCGYC 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 160
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 2 cut(s) 37, 202
BstMBI GATC 2 cut(s) 34, 199
BstMCI CGRYCG 2 cut(s) 237, 301
BstMWI GCNNNNNNNGC 2 cut(s) 14, 233
BstSCI CCNGG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 17
BstZI CGGCCG 1 cut(s) 234
BsuRI GGCC 5 cut(s) 130, 213, 236, 252, 284
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 268
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 128, 212
DdeI CTNAG 1 cut(s) 160
DinI GGCGCC 1 cut(s) 68
DpnI GATC 2 cut(s) 36, 201
DpnII GATC 2 cut(s) 34, 199
EaeI YGGCCR 1 cut(s) 234
EagI CGGCCG 1 cut(s) 234
EclXI CGGCCG 1 cut(s) 234
Eco147I AGGCCT 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 119
Eco52I CGGCCG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 119
EgeI GGCGCC 1 cut(s) 68
EheI GGCGCC 1 cut(s) 68
FaiI YATR 5 cut(s) 62, 86, 173, 258, 260
FauNDI CATATG 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 6, 211
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 6, 211
FspBI CTAG 1 cut(s) 267
GlaI GCGC 1 cut(s) 68
GluI GCNGC 2 cut(s) 6, 211
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 5 cut(s) 130, 213, 236, 252, 284
HapII CCGG 1 cut(s) 233
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 67
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 2 cut(s) 99, 303
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 151, 267
Hpy188I TCNGA 1 cut(s) 204
HpyCH4III ACNGT 2 cut(s) 13, 31
HpyCH4V TGCA 2 cut(s) 175, 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 233
HpyF3I CTNAG 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 67
HspAI GCGC 1 cut(s) 67
KasI GGCGCC 1 cut(s) 66
Kzo9I GATC 2 cut(s) 34, 199
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 7 cut(s) 58, 206, 246, 259, 273, 284, 291
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 2 cut(s) 216, 273
MalI GATC 2 cut(s) 36, 201
MbiI CCGCTC 1 cut(s) 210
MboI GATC 2 cut(s) 34, 199
MhlI GDGCHC 1 cut(s) 119
Mly113I GGCGCC 1 cut(s) 67
MlyI GAGTC 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 7 cut(s) 80, 97, 169, 198, 242, 274, 295
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 14, 233
NarI GGCGCC 1 cut(s) 67
NciI CCSGG 1 cut(s) 233
NdeI CATATG 1 cut(s) 258
NdeII GATC 2 cut(s) 34, 199
NheI GCTAGC 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 68
NmuCI GTSAC 2 cut(s) 216, 273
PceI AGGCCT 1 cut(s) 284
PfeI GAWTC 1 cut(s) 99
PflMI CCANNNNNTGG 2 cut(s) 125, 259
PkrI GCNGC 2 cut(s) 7, 212
PleI GAGTC 1 cut(s) 311
PluTI GGCGCC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 68
PspPI GGNCC 2 cut(s) 128, 212
SatI GCNGC 2 cut(s) 6, 211
Sau3AI GATC 2 cut(s) 34, 199
Sau96I GGNCC 2 cut(s) 128, 212
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 1 cut(s) 119
SetI ASST 6 cut(s) 141, 166, 180, 229, 268, 311
SfoI GGCGCC 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SseBI AGGCCT 1 cut(s) 284
SsiI CCGC 1 cut(s) 210
SspDI GGCGCC 1 cut(s) 66
SspMI CTAG 1 cut(s) 267
StuI AGGCCT 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 13, 31
TaqI TCGA 2 cut(s) 102, 301
TaqII GACCGA 1 cut(s) 287
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 99
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 2 cut(s) 216, 273
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 216, 273
TspRI CASTG 1 cut(s) 225
Van91I CCANNNNNTGG 2 cut(s) 125, 259
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.