Rw4G016990

Lactoylglutathione lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0024964
Physical Location & Seq
Reverse (-)
38423569 .. 38423977
409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G016990.1

Sequence Viewer

Length: 315 bp
ATGACAGCAACAGTGGCACAAGCACTAACTGTGGATCACATTGCCAGACAATCCAACAACATAAGGCGCCTTGCCGATTTCTACATAAAGATATTTGGATTCGAGGAAGTAGAAAGCCCAAAGGTTGGGCCATTCAAGGTGATGTGGCTGATTTTACCCTTAGCTTTTACTATGCACCTTATTGAGTGCAACCCAACTAACCGGAGGAGCGGCCCGTCATCGATAGCTGACCCGACTGATATTCCCAGAGGCCACCATATGGTAGCTGGCCCGTCACCAGAGGCCTCTGGGAATATCGGCCGGGTCAGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase Glyoxalase_4

Protein Analysis

104

Amino Acids

11.46

Weight (kDa)

7.98

Isoelectric Point (pI)

74.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024964)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0416061
rosa_samantha Rh4AG200100
rosa_wichuraiana Rw4G016990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 66
AccB7I CCANNNNNTGG 2 cut(s) 125, 259
AccBSI CCGCTC 1 cut(s) 210
AciI CCGC 1 cut(s) 210
AclWI GGATC 1 cut(s) 42
AcoI YGGCCR 1 cut(s) 298
AcyI GRCGYC 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 125, 259
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 4 cut(s) 164, 227, 266, 309
AluI AGCT 4 cut(s) 164, 227, 266, 309
AlwI GGATC 1 cut(s) 42
AoxI GGCC 6 cut(s) 128, 211, 250, 268, 282, 298
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 3 cut(s) 128, 212, 269
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 151, 267
BanI GGYRCC 1 cut(s) 66
BcnI CCSGG 1 cut(s) 302
BfoI RGCGCY 1 cut(s) 70
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 302
BmgT120I GGNCC 3 cut(s) 128, 212, 269
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 302
Bpu10I CCTNAGC 1 cut(s) 160
BpuMI CCSGG 1 cut(s) 302
Bsa29I ATCGAT 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 67
BsaWI WCCGGW 1 cut(s) 201
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 259
Bse3DI GCAATG 1 cut(s) 39
BseCI ATCGAT 1 cut(s) 221
BseLI CCNNNNNNNGG 2 cut(s) 125, 259
BseMI GCAATG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 220
BseX3I CGGCCG 1 cut(s) 298
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 6 cut(s) 130, 213, 252, 270, 284, 300
BshNI GGYRCC 1 cut(s) 66
BshVI ATCGAT 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 301
BsiSI CCGG 2 cut(s) 202, 301
BslI CCNNNNNNNGG 2 cut(s) 125, 259
BsnI GGCC 6 cut(s) 130, 213, 252, 270, 284, 300
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 1 cut(s) 210
BspANI GGCC 6 cut(s) 130, 213, 252, 270, 284, 300
BspDI ATCGAT 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 68
BspPI GGATC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 39
BssMI GATC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 67
Bst4CI ACNGT 2 cut(s) 13, 31
BstACI GRCGYC 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 160
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 2 cut(s) 14, 306
BstSCI CCNGG 1 cut(s) 300
BstZI CGGCCG 1 cut(s) 298
Bsu15I ATCGAT 1 cut(s) 221
BsuRI GGCC 6 cut(s) 130, 213, 252, 270, 284, 300
BsuTUI ATCGAT 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 268
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 3 cut(s) 128, 212, 269
ClaI ATCGAT 1 cut(s) 221
DdeI CTNAG 1 cut(s) 160
DinI GGCGCC 1 cut(s) 68
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 298
EagI CGGCCG 1 cut(s) 298
EclXI CGGCCG 1 cut(s) 298
Eco147I AGGCCT 1 cut(s) 284
Eco52I CGGCCG 1 cut(s) 298
EgeI GGCGCC 1 cut(s) 68
EheI GGCGCC 1 cut(s) 68
FaiI YATR 5 cut(s) 62, 86, 173, 258, 260
FauNDI CATATG 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 211
GlaI GCGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 211
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 6 cut(s) 130, 213, 252, 270, 284, 300
HapII CCGG 2 cut(s) 202, 301
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 67
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 1 cut(s) 99
HpaII CCGG 2 cut(s) 202, 301
HphI GGTGA 2 cut(s) 151, 267
HpyCH4III ACNGT 2 cut(s) 13, 31
HpyCH4V TGCA 2 cut(s) 175, 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 306
HpyF3I CTNAG 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 67
HspAI GCGC 1 cut(s) 67
KasI GGCGCC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 6 cut(s) 58, 215, 252, 259, 273, 291
MaeIII GTNAC 1 cut(s) 273
MalI GATC 1 cut(s) 36
MbiI CCGCTC 1 cut(s) 210
MboI GATC 1 cut(s) 34
Mly113I GGCGCC 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 5 cut(s) 97, 198, 242, 274, 295
MspI CCGG 2 cut(s) 202, 301
MspR9I CCNGG 1 cut(s) 302
MwoI GCNNNNNNNGC 2 cut(s) 14, 306
NarI GGCGCC 1 cut(s) 67
NciI CCSGG 1 cut(s) 302
NdeI CATATG 1 cut(s) 258
NdeII GATC 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 273
PceI AGGCCT 1 cut(s) 284
PfeI GAWTC 1 cut(s) 99
PflMI CCANNNNNTGG 2 cut(s) 125, 259
PkrI GCNGC 1 cut(s) 212
PluTI GGCGCC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 68
PspPI GGNCC 3 cut(s) 128, 212, 269
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 3 cut(s) 128, 212, 269
ScrFI CCNGG 1 cut(s) 302
SetI ASST 7 cut(s) 126, 141, 166, 180, 229, 268, 311
SfoI GGCGCC 1 cut(s) 68
SseBI AGGCCT 1 cut(s) 284
SsiI CCGC 1 cut(s) 210
SspDI GGCGCC 1 cut(s) 66
StuI AGGCCT 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 13, 31
TaqI TCGA 2 cut(s) 102, 221
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 99
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 273
Tsp45I GTSAC 1 cut(s) 273
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 2 cut(s) 125, 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.