RchiOBHm_Chr4g0421081

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
46700097 .. 46701214
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGTATATGTATAGCCCTGATATTGACACTGTGATTCTTATTTACACTCATCCATTTGATAACCTAAAGTATCTGTGGCCTTTTCAATGTCTTTGCAGGAAAGAAGTGATGGACTTGGTTAATAAAAGTGGGAAATTTACCAAAATGTTTGAGAGCTTTACAGGAACTACTGATCCATTGGGTAAGCGATTAAACAACTCAACAACTTGTGCAGAAATAGGGTGGGAACCAAAATACCCCAGTTTCTCTCAATTCCTTGAGAGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.42

Weight (kDa)

5.69

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0030052)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0421081
rosa_multiflora Rmu_sc0006442.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 1 cut(s) 134
AgsI TTSAA 1 cut(s) 86
AloI GAACNNNNNNTCC 2 cut(s) 157, 189
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
AlwI GGATC 1 cut(s) 167
AoxI GGCC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 134
BccI CCATC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 228
BmrI ACTGGG 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 240
BsgI GTGCAG 1 cut(s) 231
BshFI GGCC 1 cut(s) 79
BsnI GGCC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 172
BspANI GGCC 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 167
BsrI ACTGG 1 cut(s) 240
BssMI GATC 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 31
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 27
CviJI RGCY 3 cut(s) 15, 79, 156
CviKI_1 RGCY 3 cut(s) 15, 79, 156
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
FaiI YATR 3 cut(s) 6, 8, 12
FokI GGATG 1 cut(s) 36
HaeIII GGCC 1 cut(s) 79
HinfI GANTC 2 cut(s) 34, 262
Hpy188I TCNGA 1 cut(s) 269
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 96, 212
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 30, 82, 147, 253
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MluCI AATT 2 cut(s) 134, 251
MseI TTAA 2 cut(s) 120, 191
NdeII GATC 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 120, 191
Sau3AI GATC 1 cut(s) 172
SetI ASST 2 cut(s) 66, 158
SgeI CNNG 6 cut(s) 29, 109, 127, 174, 219, 252
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 2 cut(s) 134, 251
TaaI ACNGT 1 cut(s) 31
TasI AATT 2 cut(s) 134, 251
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 2 cut(s) 120, 191
Tru9I TTAA 2 cut(s) 120, 191
TscAI CASTG 1 cut(s) 34
TspRI CASTG 1 cut(s) 34
XapI RAATTY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.