RchiOBHm_Chr4g0426791

mediator of RNA polymerase II transcription subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0030092
Physical Location & Seq
Forward (+)
52190102 .. 52190456
355 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGGACGCAATCAGCCAATTACAAGAACAGGTGAACAAAATCGCGACCATTTCGTTTACCACCATCGGAACCCTAGAGAGGGACGATCCACCCGTCCGAATCTCCCCCAATTACCCCGACTTCGAGTCAGCACCACCAACCAACCCGAACCCGAACCCGACTGACGATGCCACCTATTTTGCGATGCCACCCAAGCTCATGAGCGCGGATCTAGTCAAAGCAGCCAAGCAGGTCTCAACCTTTAATCAATTGGATTTGGGTGACATGCAATTTTTATTTTTTTCTCTTCTCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Med21

Protein Analysis

98

Amino Acids

10.88

Weight (kDa)

4.21

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med21 PF11221 1 - 80 5.5e-11 Subunit 21 of Mediator complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030092)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0426791
rosa_samantha Rh4DG273300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AccII CGCG 2 cut(s) 44, 206
AciI CCGC 1 cut(s) 206
AclWI GGATC 2 cut(s) 80, 216
AfiI CCNNNNNNNGG 2 cut(s) 78, 79
AhdI GACNNNNNGTC 1 cut(s) 124
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 2 cut(s) 80, 216
ApeKI GCWGC 1 cut(s) 221
AspLEI GCGC 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 43, 272
BbvI GCAGC 1 cut(s) 233
BccI CCATC 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 238
BfaI CTAG 2 cut(s) 74, 212
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmeRI GACNNNNNGTC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 70
BmsI GCATC 2 cut(s) 157, 174
BsaI GGTCTC 1 cut(s) 238
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 79
BseLI CCNNNNNNNGG 2 cut(s) 78, 79
BseXI GCAGC 1 cut(s) 233
Bsh1236I CGCG 2 cut(s) 44, 206
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 78, 79
BsmAI GTCTC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 238
Bsp143I GATC 2 cut(s) 85, 208
Bsp68I TCGCGA 1 cut(s) 44
BspACI CCGC 1 cut(s) 206
BspFNI CGCG 2 cut(s) 44, 206
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 220
BspPI GGATC 2 cut(s) 80, 216
BspTNI GGTCTC 1 cut(s) 238
BssMI GATC 2 cut(s) 85, 208
Bst6I CTCTTC 1 cut(s) 291
BstFNI CGCG 2 cut(s) 44, 206
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 2 cut(s) 88, 211
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 2 cut(s) 85, 208
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 268
BstUI CGCG 2 cut(s) 44, 206
BstV1I GCAGC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BtgZI GCGATG 1 cut(s) 197
BtuMI TCGCGA 1 cut(s) 44
BveI ACCTGC 1 cut(s) 220
CciI TCATGA 1 cut(s) 198
CfoI GCGC 1 cut(s) 206
CseI GACGC 1 cut(s) 14
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 2 cut(s) 199, 265
CviJI RGCY 3 cut(s) 15, 196, 224
CviKI_1 RGCY 3 cut(s) 15, 196, 224
DpnI GATC 2 cut(s) 87, 210
DpnII GATC 2 cut(s) 85, 208
DriI GACNNNNNGTC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 291
Eam1105I GACNNNNNGTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 238
FaeI CATG 2 cut(s) 202, 268
FaiI YATR 2 cut(s) 200, 266
FaqI GGGAC 1 cut(s) 95
FatI CATG 2 cut(s) 198, 264
Fnu4HI GCNGC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 2 cut(s) 74, 212
GlaI GCGC 1 cut(s) 205
GluI GCNGC 1 cut(s) 222
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 206
Hin1II CATG 2 cut(s) 202, 268
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HinfI GANTC 2 cut(s) 99, 125
HphI GGTGA 2 cut(s) 43, 272
Hpy166II GTNNAC 2 cut(s) 34, 57
Hpy188I TCNGA 2 cut(s) 68, 98
Hpy188III TCNNGA 3 cut(s) 43, 199, 290
Hpy8I GTNNAC 2 cut(s) 34, 57
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
Hsp92II CATG 2 cut(s) 202, 268
HspAI GCGC 1 cut(s) 204
Kzo9I GATC 2 cut(s) 85, 208
LpnPI CCDG 2 cut(s) 14, 215
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 2 cut(s) 157, 174
MaeI CTAG 2 cut(s) 74, 212
MaeIII GTNAC 1 cut(s) 260
MalI GATC 2 cut(s) 87, 210
MboI GATC 2 cut(s) 85, 208
MboII GAAGA 1 cut(s) 278
MfeI CAATTG 1 cut(s) 248
MflI RGATCY 1 cut(s) 208
MluCI AATT 4 cut(s) 17, 109, 248, 269
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 1 cut(s) 72
MseI TTAA 1 cut(s) 243
MunI CAATTG 1 cut(s) 248
MvnI CGCG 2 cut(s) 44, 206
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 2 cut(s) 85, 208
NlaIII CATG 2 cut(s) 202, 268
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 260
NruI TCGCGA 1 cut(s) 44
NspI RCATGY 1 cut(s) 268
PagI TCATGA 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 70
PsuI RGATCY 1 cut(s) 208
RruI TCGCGA 1 cut(s) 44
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 2 cut(s) 85, 208
SchI GAGTC 1 cut(s) 134
SetI ASST 5 cut(s) 33, 176, 198, 234, 242
SfaNI GCATC 2 cut(s) 157, 174
Sse9I AATT 4 cut(s) 17, 109, 248, 269
SsiI CCGC 1 cut(s) 206
SspMI CTAG 2 cut(s) 74, 212
TaqI TCGA 2 cut(s) 123, 291
TasI AATT 4 cut(s) 17, 109, 248, 269
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 260
XceI RCATGY 1 cut(s) 268
XspI CTAG 2 cut(s) 74, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.