RchiOBHm_Chr4g0427671

MLO-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
52863833 .. 52868367
4535 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 162 bp
ATGGCTGGCATTCAAAAGCAATGGCACGGTGATGTGAGGAGGAAAAGGAAGAAGGAAGATCAAGAATCACAATCTGCACACGTCTTCTTCCATGGAATGGAGCTCCATGAGGCAAAGCATATGTATATGCAGATTTCTTGCTTCTGCTATGAATCAAATTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

53

Amino Acids

6.4

Weight (kDa)

7.86

Isoelectric Point (pI)

73.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020536)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0427671
rosa_rugosa Rorug05G0131100 Rorug05G0146400
rosa_samantha Rh3CG362100 Rh4CG117800 Rh4CG297000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 1 cut(s) 14
AjiI CACGTC 1 cut(s) 82
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw21I GWGCWC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 41
BanII GRGCYC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 105
BmgBI CACGTC 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 97
BsmI GAATGC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 58
Bsp19I CCATGG 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 7
BstDSI CCRYGG 1 cut(s) 91
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 91
BtrI CACGTC 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 7
CviAII CATG 2 cut(s) 92, 107
CviJI RGCY 2 cut(s) 5, 103
CviKI_1 RGCY 2 cut(s) 5, 103
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 2 cut(s) 95, 110
FaiI YATR 7 cut(s) 93, 108, 120, 122, 126, 128, 150
FatI CATG 2 cut(s) 91, 106
FauNDI CATATG 1 cut(s) 120
FriOI GRGCYC 1 cut(s) 105
Hin1II CATG 2 cut(s) 95, 110
HinfI GANTC 2 cut(s) 65, 152
HphI GGTGA 1 cut(s) 41
Hpy188III TCNNGA 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 77, 130
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 2 cut(s) 95, 110
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 2 cut(s) 100, 108
MaeII ACGT 1 cut(s) 81
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 4 cut(s) 61, 68, 76, 79
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 1 cut(s) 157
MnlI CCTC 3 cut(s) 30, 33, 103
MslI CAYNNNNRTG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 9
NcoI CCATGG 1 cut(s) 91
NdeI CATATG 1 cut(s) 120
NdeII GATC 1 cut(s) 58
NlaIII CATG 2 cut(s) 95, 110
PctI GAATGC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 65, 152
PflMI CCANNNNNTGG 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 30
SacI GAGCTC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 58
SduI GDGCHC 1 cut(s) 105
SetI ASST 2 cut(s) 84, 105
SgeI CNNG 7 cut(s) 18, 38, 74, 92, 104, 119, 150
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 1 cut(s) 157
SstI GAGCTC 1 cut(s) 105
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 84
TasI AATT 1 cut(s) 157
TfiI GAWTC 2 cut(s) 65, 152
Van91I CCANNNNNTGG 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.