Rh4CG117800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0020536
Physical Location & Seq
Forward (+)
22521113 .. 22544604
23492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG117800.1

Sequence Viewer

Length: 729 bp
ATGAAAGCAGATTGGCAGAGAGTTCGGCGAGCAATACGTTTCCACGTGTCAAATATCGCCACTAAGAGGGATCCCTTTTTGCCGGAGTGGAAGCTTGAATGCAAGGCCGACGAGGGCTTTTGGAGGGCTGTTTATGCCGCTGGCGCTATTGGCGGCGCCAGGGAGGAAGCGGGTCGAGGATATGAGGACCTCAGACTGGGTTCTCTTCCCGCCTGTGATAGTAGGGTGGAGCACGGGCTCAACTTTCTTGGGCTAGGACGGGAGGCATTTGGTCTTGGGTTTAGTACAGATGGTGAGGGTGAGGACAATGGTGGCTTGGCTGTTGATGGAACTGACGTCCATACTGGTCGAGCTCTTCGAGATGGAGGAGATGGTTGTGACTGCGGCGGCTTGTTCTTCAACAATGAGGAAGATCGTTGTAGCACTCAAAATGGTGGTTGGCAAAATCATGCAGTGGCCTTCTTTGCTGAGCATCCTGAGTTGGCAAAGAATGACGTACTTTTACATAACTGGAGAATCATATGTTGGGCACTATACCCATATGATATAATTGGAGGAAGATTTCCAGACATTGGTTGGCATACGGTCAGCAGGAGAGAAAAGAAAGAAGGAATTGCTGCTGATCCAAATATTGACACTAAAATGAAGATGGGTTCACAGTTCAAGGGTAAGATACTAGAAGATAACATGGCTGGCATTCTAAAGGATGTCAGCAATGATTTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.76

Weight (kDa)

5.42

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020536)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0427671
rosa_rugosa Rorug05G0131100 Rorug05G0146400
rosa_samantha Rh3CG362100 Rh4CG117800 Rh4CG297000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 155
AccB7I CCANNNNNTGG 1 cut(s) 572
AciI CCGC 6 cut(s) 138, 153, 170, 210, 384, 387
AclWI GGATC 3 cut(s) 65, 78, 617
AcvI CACGTG 1 cut(s) 46
AcyI GRCGYC 2 cut(s) 156, 336
AfaI GTAC 2 cut(s) 286, 498
AfiI CCNNNNNNNGG 3 cut(s) 66, 196, 572
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 3 cut(s) 98, 400, 664
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 2 cut(s) 508, 540
AluBI AGCT 2 cut(s) 94, 353
AluI AGCT 2 cut(s) 94, 353
Alw21I GWGCWC 2 cut(s) 234, 355
AlwI GGATC 3 cut(s) 65, 78, 617
AoxI GGCC 2 cut(s) 105, 456
ApeKI GCWGC 1 cut(s) 617
AspLEI GCGC 2 cut(s) 146, 158
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 305, 311
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 532
BamHI GGATCC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 2 cut(s) 240, 355
BbrPI CACGTG 1 cut(s) 46
Bbv12I GWGCWC 2 cut(s) 234, 355
BbvI GCAGC 1 cut(s) 604
BccI CCATC 5 cut(s) 284, 320, 356, 365, 643
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 1 cut(s) 160
BfaI CTAG 2 cut(s) 254, 677
BfoI RGCGCY 2 cut(s) 147, 159
BisI GCNGC 5 cut(s) 138, 154, 385, 388, 618
BlpI GCTNAGC 1 cut(s) 468
BlsI GCNGC 5 cut(s) 139, 155, 386, 389, 619
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 72, 157
BmrFI CCNGG 1 cut(s) 160
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 481
BmuI ACTGGG 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 532
Bpu1102I GCTNAGC 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 46
BsaHI GRCGYC 2 cut(s) 156, 336
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 196, 572
Bse1I ACTGG 3 cut(s) 201, 349, 515
Bse3DI GCAATG 1 cut(s) 721
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 472, 712
BseLI CCNNNNNNNGG 3 cut(s) 66, 196, 572
BseMI GCAATG 1 cut(s) 721
BseMII CTCAG 3 cut(s) 205, 459, 468
BseNI ACTGG 3 cut(s) 201, 349, 515
BseRI GAGGAG 1 cut(s) 381
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 1 cut(s) 604
BshFI GGCC 2 cut(s) 107, 458
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 234, 355
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 3 cut(s) 66, 196, 572
BsmI GAATGC 2 cut(s) 104, 696
BsnI GGCC 2 cut(s) 107, 458
Bsp1286I GDGCHC 4 cut(s) 234, 240, 355, 532
Bsp143I GATC 3 cut(s) 70, 412, 622
Bsp1720I GCTNAGC 1 cut(s) 468
BspACI CCGC 6 cut(s) 138, 153, 170, 210, 384, 387
BspANI GGCC 2 cut(s) 107, 458
BspCNI CTCAG 3 cut(s) 204, 460, 469
BspLI GGNNCC 2 cut(s) 72, 157
BspPI GGATC 3 cut(s) 65, 78, 617
BspQI GCTCTTC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 721
BsrI ACTGG 3 cut(s) 201, 349, 515
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 3 cut(s) 70, 412, 622
BssNI GRCGYC 2 cut(s) 156, 336
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 586, 660
Bst6I CTCTTC 2 cut(s) 210, 360
BstACI GRCGYC 2 cut(s) 156, 336
BstBAI YACGTR 1 cut(s) 46
BstC8I GCNNGC 3 cut(s) 30, 142, 694
BstDEI CTNAG 4 cut(s) 63, 191, 468, 477
BstF5I GGATG 2 cut(s) 472, 712
BstH2I RGCGCY 2 cut(s) 147, 159
BstHHI GCGC 2 cut(s) 146, 158
BstKTI GATC 3 cut(s) 73, 415, 625
BstMBI GATC 3 cut(s) 70, 412, 622
BstMWI GCNNNNNNNGC 4 cut(s) 134, 143, 150, 464
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 158
BstSLI GKGCMC 1 cut(s) 532
BstV1I GCAGC 1 cut(s) 604
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 2 cut(s) 107, 458
BtsCI GGATG 2 cut(s) 472, 712
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 459
Cac8I GCNNGC 3 cut(s) 30, 142, 694
CfoI GCGC 2 cut(s) 146, 158
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 285, 497
CviAII CATG 2 cut(s) 449, 688
CviQI GTAC 2 cut(s) 285, 497
DdeI CTNAG 4 cut(s) 63, 191, 468, 477
DinI GGCGCC 1 cut(s) 157
DpnI GATC 3 cut(s) 72, 414, 624
DpnII GATC 3 cut(s) 70, 412, 622
Eam1104I CTCTTC 2 cut(s) 210, 360
EarI CTCTTC 2 cut(s) 210, 360
Ecl136II GAGCTC 1 cut(s) 353
Eco24I GRGCYC 2 cut(s) 240, 355
Eco47I GGWCC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 353
Eco72I CACGTG 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 158
EcoT38I GRGCYC 2 cut(s) 240, 355
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
FaeI CATG 2 cut(s) 452, 691
FatI CATG 2 cut(s) 448, 687
FauI CCCGC 2 cut(s) 163, 217
FauNDI CATATG 2 cut(s) 521, 541
Fnu4HI GCNGC 5 cut(s) 138, 154, 385, 388, 618
FokI GGATG 2 cut(s) 459, 719
FriOI GRGCYC 2 cut(s) 240, 355
Fsp4HI GCNGC 5 cut(s) 138, 154, 385, 388, 618
FspBI CTAG 2 cut(s) 254, 677
GlaI GCGC 2 cut(s) 145, 157
GluI GCNGC 5 cut(s) 138, 154, 385, 388, 618
GsuI CTGGAG 1 cut(s) 532
HaeII RGCGCY 2 cut(s) 147, 159
HaeIII GGCC 2 cut(s) 107, 458
HapII CCGG 1 cut(s) 83
HhaI GCGC 2 cut(s) 146, 158
Hin1I GRCGYC 2 cut(s) 156, 336
Hin1II CATG 2 cut(s) 452, 691
Hin6I GCGC 2 cut(s) 144, 156
HinP1I GCGC 2 cut(s) 144, 156
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 516
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 305, 311
Hpy166II GTNNAC 1 cut(s) 656
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 3 cut(s) 359, 476, 566
Hpy8I GTNNAC 1 cut(s) 656
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 469, 602
HpyCH4III ACNGT 2 cut(s) 586, 660
HpyCH4IV ACGT 4 cut(s) 37, 45, 336, 495
HpyCH4V TGCA 2 cut(s) 102, 452
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 143, 150, 464
HpyF3I CTNAG 4 cut(s) 63, 191, 468, 477
HpySE526I ACGT 4 cut(s) 37, 45, 336, 495
Hsp92I GRCGYC 2 cut(s) 156, 336
Hsp92II CATG 2 cut(s) 452, 691
HspAI GCGC 2 cut(s) 144, 156
KasI GGCGCC 1 cut(s) 155
Kzo9I GATC 3 cut(s) 70, 412, 622
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 1 cut(s) 604
LweI GCATC 1 cut(s) 481
MaeI CTAG 2 cut(s) 254, 677
MaeII ACGT 4 cut(s) 37, 45, 336, 495
MaeIII GTNAC 1 cut(s) 377
MalI GATC 3 cut(s) 72, 414, 624
MboI GATC 3 cut(s) 70, 412, 622
MboII GAAGA 7 cut(s) 197, 347, 388, 422, 570, 658, 692
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 4 cut(s) 234, 240, 355, 532
MluCI AATT 2 cut(s) 549, 612
Mly113I GGCGCC 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 641
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 160
Mva1269I GAATGC 2 cut(s) 104, 696
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 4 cut(s) 134, 143, 150, 464
NarI GGCGCC 1 cut(s) 156
NdeI CATATG 2 cut(s) 521, 541
NdeII GATC 3 cut(s) 70, 412, 622
NlaIII CATG 2 cut(s) 452, 691
NlaIV GGNNCC 2 cut(s) 72, 157
NmuCI GTSAC 1 cut(s) 377
PciSI GCTCTTC 1 cut(s) 360
PcsI WCGNNNNNNNCGW 1 cut(s) 355
PctI GAATGC 2 cut(s) 104, 696
PfeI GAWTC 1 cut(s) 516
PflMI CCANNNNNTGG 1 cut(s) 572
PkrI GCNGC 5 cut(s) 139, 155, 386, 389, 619
PluTI GGCGCC 1 cut(s) 159
PmaCI CACGTG 1 cut(s) 46
PmlI CACGTG 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 187
Psp124BI GAGCTC 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 158
PspCI CACGTG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 72, 157
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 2 cut(s) 286, 498
RsaNI GTAC 2 cut(s) 285, 497
RseI CAYNNNNRTG 1 cut(s) 641
SacI GAGCTC 1 cut(s) 355
SapI GCTCTTC 1 cut(s) 360
SatI GCNGC 5 cut(s) 138, 154, 385, 388, 618
Sau3AI GATC 3 cut(s) 70, 412, 622
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 4 cut(s) 234, 240, 355, 532
SetI ASST 7 cut(s) 40, 48, 96, 192, 339, 355, 498
SfaNI GCATC 1 cut(s) 481
SfoI GGCGCC 1 cut(s) 157
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 641
Sse9I AATT 2 cut(s) 549, 612
SsiI CCGC 6 cut(s) 138, 153, 170, 210, 384, 387
SspDI GGCGCC 1 cut(s) 155
SspI AATATT 1 cut(s) 631
SspMI CTAG 2 cut(s) 254, 677
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 2 cut(s) 586, 660
TaiI ACGT 4 cut(s) 40, 48, 339, 498
TaqI TCGA 3 cut(s) 175, 349, 358
TasI AATT 2 cut(s) 549, 612
TatI WGTACW 1 cut(s) 284
TauI GCSGC 4 cut(s) 140, 156, 387, 390
TfiI GAWTC 1 cut(s) 516
TscAI CASTG 1 cut(s) 459
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 2 cut(s) 17, 659
TspRI CASTG 1 cut(s) 459
Van91I CCANNNNNTGG 1 cut(s) 572
VpaK11BI GGWCC 1 cut(s) 187
XcmI CCANNNNNNNNNTGG 1 cut(s) 573
XspI CTAG 2 cut(s) 254, 677
ZraI GACGTC 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.