RchiOBHm_Chr4g0436891

Glucose-induced degradation protein 4 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
60117103 .. 60119741
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGGTCATCACCTTTTGGGAAGGGGAGATTGTTGACACCAAGAATTATACTTCATTCACTGAGAAGTGGGAAGCAATCCAAGTGGAAGTTGATGGTGGCAAATCATTAGATCTCAGCAACTATCCATACATATTCTTGATGGAAGGAGCAATACTTTGTGAATGTTGGCACAGATTGTGGTTTGACTATAGCCAGCTTTTACTCTGTGTTTCTCATGTAGTGATGGCTCCATCAACGGCTTCTATTATGATCCTAATAGCAGCCCGTTCCAGAAGCTTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.77

Weight (kDa)

4.74

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030020)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0436891
rosa_samantha Rh4AG351400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 244
AluBI AGCT 3 cut(s) 196, 276, 282
AluI AGCT 3 cut(s) 196, 276, 282
AlwI GGATC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 260
BarI GAAGNNNNNNTAC 2 cut(s) 135, 167
BbvI GCAGC 1 cut(s) 272
BccI CCATC 4 cut(s) 86, 133, 217, 238
BceAI ACGGC 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 187
BglII AGATCT 1 cut(s) 109
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 228
BseMII CTCAG 2 cut(s) 51, 127
BseXI GCAGC 1 cut(s) 272
Bsp143I GATC 2 cut(s) 109, 249
BspCNI CTCAG 2 cut(s) 52, 126
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 244
BssMI GATC 2 cut(s) 109, 249
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 60, 113
BstKTI GATC 2 cut(s) 112, 252
BstMBI GATC 2 cut(s) 109, 249
BstSFI CTRYAG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 194
CspCI CAANNNNNGTGG 2 cut(s) 63, 98
CviAII CATG 1 cut(s) 215
CviJI RGCY 7 cut(s) 192, 196, 227, 239, 263, 276, 282
CviKI_1 RGCY 7 cut(s) 192, 196, 227, 239, 263, 276, 282
DdeI CTNAG 2 cut(s) 60, 113
DpnI GATC 2 cut(s) 111, 251
DpnII GATC 2 cut(s) 109, 249
FaeI CATG 1 cut(s) 218
FaiI YATR 6 cut(s) 48, 127, 131, 189, 216, 248
FatI CATG 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 261
Hin1II CATG 1 cut(s) 218
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 136, 270
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 14, 137
HpyF3I CTNAG 2 cut(s) 60, 113
Hsp92II CATG 1 cut(s) 218
Kzo9I GATC 2 cut(s) 109, 249
LmnI GCTCC 2 cut(s) 146, 232
LpnPI CCDG 1 cut(s) 206
Lsp1109I GCAGC 1 cut(s) 272
MalI GATC 2 cut(s) 111, 251
MboI GATC 2 cut(s) 109, 249
MflI RGATCY 1 cut(s) 109
MluCI AATT 1 cut(s) 43
NdeII GATC 2 cut(s) 109, 249
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 228
PkrI GCNGC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 109
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 2 cut(s) 109, 249
SetI ASST 4 cut(s) 14, 198, 278, 284
SfcI CTRYAG 1 cut(s) 187
SgeI CNNG 6 cut(s) 52, 92, 148, 205, 227, 276
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 1 cut(s) 43
TasI AATT 1 cut(s) 43
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 42
TspRI CASTG 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.