Rh4AG351400

Glucose-induced degradation protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0030020
Physical Location & Seq
Forward (+)
65992020 .. 66001248
9229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG351400.1

Sequence Viewer

Length: 486 bp
ATGTTTGAACATTTCAGTCAACGTCAGCCTCAAGGGAATGGGTGTTCTAGTTTGGCTAAGGAAAAGAAAGTGGATTCAGAGAGACGAAAAAAGAAGCTAAAGAAGGAAGGGAGAGGAGAAGAGTCTCACGGGCAATTGTTCATCTGGGGTGTTCGGATACAAGGGTGTGATCTTGAGAATGGTTATCTGTGTGGAACCATGGAAGCACTTAATGTTCCCATGGCTGACACACCGGTCATCACCTTTTGGGAAGGGGAGATTGTTGACACCAAGAATTATACTTCATTCACTGAGAAGTGGGAAGCAATATCTCAGCAACTATCCATACATATTCTTGAGATGGAAGGAGCAATACTTTGTGAATGTTGGCACAGATTGTGGTTTGACTATAGCCAGCTTTTACTCTGTGTTTCTCATGTAGTGATGGCTCCATCAACGGCTTCTATTATGATCCTAATAGCAGCCCGTTCCAGAAGCTTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

161

Amino Acids

18.34

Weight (kDa)

6.21

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vac_ImportDeg PF09783 43 - 105 3.8e-10 Vacuolar import and degradation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030020)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0436891
rosa_samantha Rh4AG351400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AclWI GGATC 1 cut(s) 445
AgeI ACCGGT 1 cut(s) 232
AgsI TTSAA 1 cut(s) 8
AloI GAACNNNNNNTCC 2 cut(s) 28, 60
AluBI AGCT 4 cut(s) 97, 397, 477, 483
AluI AGCT 4 cut(s) 97, 397, 477, 483
Alw26I GTCTC 2 cut(s) 76, 129
AlwI GGATC 1 cut(s) 445
ApeKI GCWGC 1 cut(s) 461
AsiGI ACCGGT 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 232
BaeI ACNNNNGTAYC 2 cut(s) 149, 182
BarI GAAGNNNNNNTAC 2 cut(s) 336, 368
BbvI GCAGC 1 cut(s) 473
BccI CCATC 3 cut(s) 334, 418, 439
BceAI ACGGC 1 cut(s) 453
BciVI GTATCC 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 76, 129
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 388
BfuI GTATCC 1 cut(s) 150
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
BmiI GGNNCC 2 cut(s) 196, 429
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 3 cut(s) 15, 194, 356
BsaJI CCNNGG 2 cut(s) 198, 219
BsaWI WCCGGW 1 cut(s) 232
Bse118I RCCGGY 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 198, 219
BseMII CTCAG 2 cut(s) 282, 326
BseRI GAGGAG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 473
BshTI ACCGGT 1 cut(s) 232
BsiSI CCGG 1 cut(s) 233
BsmAI GTCTC 2 cut(s) 76, 129
BsmBI CGTCTC 1 cut(s) 76
Bsp143I GATC 2 cut(s) 169, 450
Bsp19I CCATGG 2 cut(s) 198, 219
BspCNI CTCAG 2 cut(s) 283, 325
BspLI GGNNCC 2 cut(s) 196, 429
BspPI GGATC 1 cut(s) 445
BsrFI RCCGGY 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 198, 219
BssMI GATC 2 cut(s) 169, 450
BssT1I CCWWGG 2 cut(s) 198, 219
Bst6I CTCTTC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 3 cut(s) 57, 291, 312
BstDSI CCRYGG 2 cut(s) 198, 219
BstKTI GATC 2 cut(s) 172, 453
BstMAI GTCTC 2 cut(s) 76, 129
BstMBI GATC 2 cut(s) 169, 450
BstSFI CTRYAG 1 cut(s) 388
BstV1I GCAGC 1 cut(s) 473
BsuI GTATCC 1 cut(s) 150
BtgI CCRYGG 2 cut(s) 198, 219
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 232
CspAI ACCGGT 1 cut(s) 232
CviAII CATG 3 cut(s) 199, 220, 416
DdeI CTNAG 3 cut(s) 57, 291, 312
DpnI GATC 2 cut(s) 171, 452
DpnII GATC 2 cut(s) 169, 450
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 198, 219
EcoT14I CCWWGG 2 cut(s) 198, 219
ErhI CCWWGG 2 cut(s) 198, 219
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 3 cut(s) 202, 223, 419
FaiI YATR 8 cut(s) 200, 221, 279, 326, 330, 390, 417, 449
FatI CATG 3 cut(s) 198, 219, 415
Fnu4HI GCNGC 1 cut(s) 462
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 1 cut(s) 48
GluI GCNGC 1 cut(s) 462
HapII CCGG 1 cut(s) 233
Hin1II CATG 3 cut(s) 202, 223, 419
HincII GTYRAC 2 cut(s) 20, 265
HindII GTYRAC 2 cut(s) 20, 265
HindIII AAGCTT 1 cut(s) 475
HinfI GANTC 2 cut(s) 74, 122
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 2 cut(s) 20, 265
Hpy188I TCNGA 2 cut(s) 79, 156
Hpy188III TCNNGA 3 cut(s) 173, 335, 471
Hpy8I GTNNAC 2 cut(s) 20, 265
HpyAV CCTTC 4 cut(s) 97, 101, 245, 338
HpyCH4IV ACGT 1 cut(s) 22
HpyF3I CTNAG 3 cut(s) 57, 291, 312
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 3 cut(s) 202, 223, 419
Kzo9I GATC 2 cut(s) 169, 450
LmnI GCTCC 2 cut(s) 347, 433
LpnPI CCDG 3 cut(s) 130, 246, 407
Lsp1109I GCAGC 1 cut(s) 473
MaeI CTAG 1 cut(s) 48
MaeII ACGT 1 cut(s) 22
MalI GATC 2 cut(s) 171, 452
MboI GATC 2 cut(s) 169, 450
MboII GAAGA 1 cut(s) 131
MfeI CAATTG 1 cut(s) 134
MluCI AATT 2 cut(s) 134, 274
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 2 cut(s) 39, 107
MseI TTAA 1 cut(s) 210
MspI CCGG 1 cut(s) 233
MunI CAATTG 1 cut(s) 134
NcoI CCATGG 2 cut(s) 198, 219
NdeII GATC 2 cut(s) 169, 450
NlaIII CATG 3 cut(s) 202, 223, 419
NlaIV GGNNCC 2 cut(s) 196, 429
PfeI GAWTC 1 cut(s) 74
PinAI ACCGGT 1 cut(s) 232
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 196, 429
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 2 cut(s) 169, 450
SchI GAGTC 1 cut(s) 131
SetI ASST 6 cut(s) 25, 99, 245, 399, 479, 485
SfcI CTRYAG 1 cut(s) 388
SmlI CTYRAG 4 cut(s) 30, 173, 335, 478
SmoI CTYRAG 4 cut(s) 30, 173, 335, 478
Sse9I AATT 2 cut(s) 134, 274
SspMI CTAG 1 cut(s) 48
StyI CCWWGG 2 cut(s) 198, 219
TaiI ACGT 1 cut(s) 25
TasI AATT 2 cut(s) 134, 274
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 295
TseI GCWGC 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 130, 273
TspRI CASTG 1 cut(s) 295
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.