SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0447311 |
| rosa_samantha | Rh4DG448600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 657 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 584 |
| AciI | CCGC | 2 cut(s) | 378, 751 |
| AclWI | GGATC | 1 cut(s) | 689 |
| AcsI | RAATTY | 2 cut(s) | 59, 754 |
| AfaI | GTAC | 2 cut(s) | 362, 823 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 318, 584 |
| AgsI | TTSAA | 3 cut(s) | 53, 65, 739 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 671, 703 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 590, 622 |
| AluBI | AGCT | 3 cut(s) | 180, 477, 710 |
| AluI | AGCT | 3 cut(s) | 180, 477, 710 |
| Alw21I | GWGCWC | 1 cut(s) | 479 |
| AlwI | GGATC | 1 cut(s) | 689 |
| AoxI | GGCC | 3 cut(s) | 106, 128, 789 |
| ApeKI | GCWGC | 1 cut(s) | 550 |
| ApoI | RAATTY | 2 cut(s) | 59, 754 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 291 |
| AspS9I | GGNCC | 2 cut(s) | 162, 621 |
| AsuHPI | GGTGA | 1 cut(s) | 704 |
| AvaII | GGWCC | 2 cut(s) | 162, 621 |
| AxyI | CCTNAGG | 2 cut(s) | 393, 495 |
| BanII | GRGCYC | 2 cut(s) | 377, 479 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 779, 811 |
| BbsI | GAAGAC | 1 cut(s) | 41 |
| Bbv12I | GWGCWC | 1 cut(s) | 479 |
| BbvI | GCAGC | 1 cut(s) | 562 |
| BccI | CCATC | 3 cut(s) | 535, 562, 812 |
| BisI | GCNGC | 1 cut(s) | 551 |
| BlsI | GCNGC | 1 cut(s) | 552 |
| Bme18I | GGWCC | 2 cut(s) | 162, 621 |
| BmgT120I | GGNCC | 2 cut(s) | 162, 621 |
| BmiI | GGNNCC | 2 cut(s) | 163, 608 |
| BmrI | ACTGGG | 1 cut(s) | 264 |
| BmsI | GCATC | 1 cut(s) | 298 |
| BmuI | ACTGGG | 1 cut(s) | 264 |
| BpiI | GAAGAC | 1 cut(s) | 41 |
| Bpu10I | CCTNAGC | 2 cut(s) | 17, 780 |
| BpuEI | CTTGAG | 1 cut(s) | 341 |
| BsaAI | YACGTR | 1 cut(s) | 825 |
| BsaJI | CCNNGG | 4 cut(s) | 103, 125, 594, 715 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 318, 584 |
| Bse1I | ACTGG | 1 cut(s) | 259 |
| Bse21I | CCTNAGG | 2 cut(s) | 393, 495 |
| BseDI | CCNNGG | 4 cut(s) | 103, 125, 594, 715 |
| BseGI | GGATG | 2 cut(s) | 313, 331 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 318, 584 |
| BseMII | CTCAG | 1 cut(s) | 486 |
| BseNI | ACTGG | 1 cut(s) | 259 |
| BseRI | GAGGAG | 2 cut(s) | 446, 545 |
| BseXI | GCAGC | 1 cut(s) | 562 |
| BseYI | CCCAGC | 1 cut(s) | 584 |
| BshFI | GGCC | 3 cut(s) | 108, 130, 791 |
| BsiHKAI | GWGCWC | 1 cut(s) | 479 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 318, 584 |
| BsmI | GAATGC | 1 cut(s) | 184 |
| BsnI | GGCC | 3 cut(s) | 108, 130, 791 |
| Bsp1286I | GDGCHC | 2 cut(s) | 377, 479 |
| Bsp143I | GATC | 1 cut(s) | 694 |
| Bsp19I | CCATGG | 1 cut(s) | 715 |
| BspACI | CCGC | 2 cut(s) | 378, 751 |
| BspANI | GGCC | 3 cut(s) | 108, 130, 791 |
| BspCNI | CTCAG | 1 cut(s) | 487 |
| BspLI | GGNNCC | 2 cut(s) | 163, 608 |
| BspPI | GGATC | 1 cut(s) | 689 |
| BsrI | ACTGG | 1 cut(s) | 259 |
| BssECI | CCNNGG | 4 cut(s) | 103, 125, 594, 715 |
| BssMI | GATC | 1 cut(s) | 694 |
| BssT1I | CCWWGG | 4 cut(s) | 103, 125, 594, 715 |
| Bst4CI | ACNGT | 2 cut(s) | 89, 606 |
| Bst6I | CTCTTC | 1 cut(s) | 630 |
| BstBAI | YACGTR | 1 cut(s) | 825 |
| BstC8I | GCNNGC | 3 cut(s) | 182, 712, 793 |
| BstDEI | CTNAG | 5 cut(s) | 17, 147, 393, 495, 780 |
| BstDSI | CCRYGG | 1 cut(s) | 715 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 316 |
| BstF5I | GGATG | 2 cut(s) | 313, 331 |
| BstKTI | GATC | 1 cut(s) | 697 |
| BstMBI | GATC | 1 cut(s) | 694 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 105, 127, 149, 177, 707 |
| BstNSI | RCATGY | 1 cut(s) | 446 |
| BstV1I | GCAGC | 1 cut(s) | 562 |
| BstV2I | GAAGAC | 1 cut(s) | 41 |
| Bsu36I | CCTNAGG | 2 cut(s) | 393, 495 |
| BsuRI | GGCC | 3 cut(s) | 108, 130, 791 |
| BtgI | CCRYGG | 1 cut(s) | 715 |
| BtsCI | GGATG | 2 cut(s) | 313, 331 |
| BtsIMutI | CAGTG | 2 cut(s) | 427, 529 |
| Cac8I | GCNNGC | 3 cut(s) | 182, 712, 793 |
| Cfr13I | GGNCC | 2 cut(s) | 162, 621 |
| Csp6I | GTAC | 2 cut(s) | 361, 822 |
| CviQI | GTAC | 2 cut(s) | 361, 822 |
| DdeI | CTNAG | 5 cut(s) | 17, 147, 393, 495, 780 |
| DpnI | GATC | 1 cut(s) | 696 |
| DpnII | GATC | 1 cut(s) | 694 |
| Eam1104I | CTCTTC | 1 cut(s) | 630 |
| EarI | CTCTTC | 1 cut(s) | 630 |
| EciI | GGCGGA | 1 cut(s) | 766 |
| Ecl136II | GAGCTC | 1 cut(s) | 477 |
| Eco130I | CCWWGG | 4 cut(s) | 103, 125, 594, 715 |
| Eco147I | AGGCCT | 1 cut(s) | 791 |
| Eco24I | GRGCYC | 2 cut(s) | 377, 479 |
| Eco47I | GGWCC | 2 cut(s) | 162, 621 |
| Eco53kI | GAGCTC | 1 cut(s) | 477 |
| Eco81I | CCTNAGG | 2 cut(s) | 393, 495 |
| EcoICRI | GAGCTC | 1 cut(s) | 477 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 316 |
| EcoT14I | CCWWGG | 4 cut(s) | 103, 125, 594, 715 |
| EcoT38I | GRGCYC | 2 cut(s) | 377, 479 |
| ErhI | CCWWGG | 4 cut(s) | 103, 125, 594, 715 |
| FauI | CCCGC | 1 cut(s) | 385 |
| Fnu4HI | GCNGC | 1 cut(s) | 551 |
| FokI | GGATG | 2 cut(s) | 320, 338 |
| FriOI | GRGCYC | 2 cut(s) | 377, 479 |
| Fsp4HI | GCNGC | 1 cut(s) | 551 |
| GluI | GCNGC | 1 cut(s) | 551 |
| GsaI | CCCAGC | 1 cut(s) | 588 |
| HaeIII | GGCC | 3 cut(s) | 108, 130, 791 |
| HindIII | AAGCTT | 1 cut(s) | 708 |
| HphI | GGTGA | 1 cut(s) | 704 |
| Hpy188III | TCNNGA | 2 cut(s) | 265, 296 |
| HpyAV | CCTTC | 1 cut(s) | 781 |
| HpyCH4III | ACNGT | 2 cut(s) | 89, 606 |
| HpyCH4IV | ACGT | 1 cut(s) | 824 |
| HpyCH4V | TGCA | 3 cut(s) | 43, 184, 550 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 105, 127, 149, 177, 707 |
| HpyF3I | CTNAG | 5 cut(s) | 17, 147, 393, 495, 780 |
| HpySE526I | ACGT | 1 cut(s) | 824 |
| Kzo9I | GATC | 1 cut(s) | 694 |
| LmnI | GCTCC | 1 cut(s) | 482 |
| LpnPI | CCDG | 8 cut(s) | 8, 240, 308, 507, 570, 711, 760, 805 |
| Lsp1109I | GCAGC | 1 cut(s) | 562 |
| LweI | GCATC | 1 cut(s) | 298 |
| MaeII | ACGT | 1 cut(s) | 824 |
| MaeIII | GTNAC | 1 cut(s) | 524 |
| MalI | GATC | 1 cut(s) | 696 |
| MboI | GATC | 1 cut(s) | 694 |
| MboII | GAAGA | 8 cut(s) | 41, 212, 239, 311, 549, 641, 644, 647 |
| MhlI | GDGCHC | 2 cut(s) | 377, 479 |
| MluCI | AATT | 6 cut(s) | 59, 238, 673, 680, 754, 813 |
| MroXI | GAANNNNTTC | 1 cut(s) | 291 |
| MseI | TTAA | 2 cut(s) | 459, 644 |
| Mva1269I | GAATGC | 1 cut(s) | 184 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 105, 127, 149, 177, 707 |
| NcoI | CCATGG | 1 cut(s) | 715 |
| NdeII | GATC | 1 cut(s) | 694 |
| NlaIV | GGNNCC | 2 cut(s) | 163, 608 |
| NmuCI | GTSAC | 1 cut(s) | 524 |
| NspI | RCATGY | 1 cut(s) | 446 |
| PceI | AGGCCT | 1 cut(s) | 791 |
| PctI | GAATGC | 1 cut(s) | 184 |
| PdmI | GAANNNNTTC | 1 cut(s) | 291 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 584 |
| PkrI | GCNGC | 1 cut(s) | 552 |
| Ppu21I | YACGTR | 1 cut(s) | 825 |
| PsiI | TTATAA | 1 cut(s) | 657 |
| Psp124BI | GAGCTC | 1 cut(s) | 479 |
| PspFI | CCCAGC | 1 cut(s) | 584 |
| PspN4I | GGNNCC | 2 cut(s) | 163, 608 |
| PspPI | GGNCC | 2 cut(s) | 162, 621 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 446, 478 |
| RsaI | GTAC | 2 cut(s) | 362, 823 |
| RsaNI | GTAC | 2 cut(s) | 361, 822 |
| SacI | GAGCTC | 1 cut(s) | 479 |
| SaqAI | TTAA | 2 cut(s) | 459, 644 |
| SatI | GCNGC | 1 cut(s) | 551 |
| Sau3AI | GATC | 1 cut(s) | 694 |
| Sau96I | GGNCC | 2 cut(s) | 162, 621 |
| SduI | GDGCHC | 2 cut(s) | 377, 479 |
| SfaNI | GCATC | 1 cut(s) | 298 |
| SinI | GGWCC | 2 cut(s) | 162, 621 |
| SmlI | CTYRAG | 1 cut(s) | 356 |
| SmoI | CTYRAG | 1 cut(s) | 356 |
| Sse9I | AATT | 6 cut(s) | 59, 238, 673, 680, 754, 813 |
| SseBI | AGGCCT | 1 cut(s) | 791 |
| SsiI | CCGC | 2 cut(s) | 378, 751 |
| SstI | GAGCTC | 1 cut(s) | 479 |
| StuI | AGGCCT | 1 cut(s) | 791 |
| StyI | CCWWGG | 4 cut(s) | 103, 125, 594, 715 |
| TaaI | ACNGT | 2 cut(s) | 89, 606 |
| TaiI | ACGT | 1 cut(s) | 827 |
| TaqI | TCGA | 1 cut(s) | 473 |
| TasI | AATT | 6 cut(s) | 59, 238, 673, 680, 754, 813 |
| Tru1I | TTAA | 2 cut(s) | 459, 644 |
| Tru9I | TTAA | 2 cut(s) | 459, 644 |
| TscAI | CASTG | 2 cut(s) | 427, 529 |
| TseFI | GTSAC | 1 cut(s) | 524 |
| TseI | GCWGC | 1 cut(s) | 550 |
| Tsp45I | GTSAC | 1 cut(s) | 524 |
| TspDTI | ATGAA | 4 cut(s) | 44, 83, 271, 467 |
| TspRI | CASTG | 2 cut(s) | 427, 529 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 584 |
| VpaK11BI | GGWCC | 2 cut(s) | 162, 621 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 316 |
| XapI | RAATTY | 2 cut(s) | 59, 754 |
| XceI | RCATGY | 1 cut(s) | 446 |
| XmnI | GAANNNNTTC | 1 cut(s) | 291 |