Rh4DG448600
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0030077
Physical Location & Seq
Reverse (-)
64767976 .. 64774316
6341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG448600.1

Sequence Viewer

Length: 936 bp
ATGTTGCTACTTCTACTCCTGGGACTTGTCATGAGAAGCCGAGTTTTAACGTTTGGTCTTTTGATGGCCACCTACTCTACCAATTATAGAAGGATCTCTTCACAAAGTTTTCATGGCGACCAAGGCCACTCAACATGGCGACCAAGGCCACTCAACATGGCGACTAAGGCTATTATGGGGTCCATGAGCCATAACAGCTTGCATTCACTCAACATGGAAGATGATGAGTATTCACTCAACATGGAAGATGATGATAATTCCATGAGTTTGACTGGGGGTATCAAGAAGTCTGTGGCTTTCATGGAAAAGTTTCACGAAGATTTGGATGCCTTTTATAGGCTGGATGATGAGGAAAGGCAGTTATTGATAGACCTCAAGTACCTCACTTTGAGCCCCGCTTCTCAAAAACCTAAGGAGAAAGATGTAGTCATAGTTATCAGTGATGATGAGGAGGAAAAGCATGTATTGATGAACCTTAAATACCTTGCTTCGAGCTCCACTTCTAAAAAACCTGAGGGGGCAGATGTAGTCATAGGTATCAGTGACGAGGAGGAAAAGATGGCTTTGCAGCCATCTTCTCCAAAGAAAACACTTCCAATGGCTGGGCAAACCAAGGAAAGACGGTTCCATAGAAAATGGACCAAAGAAGAAGAAGAGGCTTTAAGGCATGGTTATAAAAAGTATAAAACAAATTGGAAATTGATTTTGGGTGATCCAGCCTACAAAGCTTGCCATGGCAGAACTAATGTTGATTTGAAAGACAAATGGCGGAATTTGATGAGGGCTGATGACAGGGCTAAGGCGAAGGCCTGCTACTCATTACCAATTCAAGGTCGAATTCTTGATATTGTTGGAGAAGTTGTAATTGATTTCATGTTTGCGGGTGGTTTCATGGACATTAACAGGAGTCCAAAAGCTACTTTCAGCACTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO Myb_DNA-binding

Protein Analysis

311

Amino Acids

35.5

Weight (kDa)

7.75

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 211 - 259 1.6e-07 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 213 - 263 1.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030077)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0447311
rosa_samantha Rh4DG448600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
AccB7I CCANNNNNTGG 1 cut(s) 602
AciI CCGC 3 cut(s) 396, 769, 881
AclI AACGTT 1 cut(s) 50
AclWI GGATC 2 cut(s) 101, 707
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 2 cut(s) 772, 837
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 3 cut(s) 336, 602, 830
AgsI TTSAA 2 cut(s) 757, 830
AjnI CCWGG 1 cut(s) 18
AjuI GAANNNNNNNTTGG 2 cut(s) 689, 721
AloI GAACNNNNNNTCC 2 cut(s) 608, 640
AluBI AGCT 4 cut(s) 198, 495, 728, 917
AluI AGCT 4 cut(s) 198, 495, 728, 917
Alw21I GWGCWC 1 cut(s) 497
AlwI GGATC 2 cut(s) 101, 707
AoxI GGCC 4 cut(s) 66, 124, 146, 807
ApeKI GCWGC 1 cut(s) 568
ApoI RAATTY 2 cut(s) 772, 837
Asp700I GAANNNNTTC 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 180, 639
AsuHPI GGTGA 1 cut(s) 722
AvaII GGWCC 2 cut(s) 180, 639
AxyI CCTNAGG 2 cut(s) 411, 513
BalI TGGCCA 1 cut(s) 68
BanII GRGCYC 2 cut(s) 395, 497
BarI GAAGNNNNNNTAC 2 cut(s) 797, 829
Bbv12I GWGCWC 1 cut(s) 497
BbvI GCAGC 1 cut(s) 580
BccI CCATC 3 cut(s) 58, 553, 580
BciT130I CCWGG 1 cut(s) 20
BisI GCNGC 1 cut(s) 569
BlsI GCNGC 1 cut(s) 570
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 2 cut(s) 180, 639
BmgT120I GGNCC 2 cut(s) 180, 639
BmiI GGNNCC 2 cut(s) 181, 626
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 316
BmuI ACTGGG 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 798
BpuEI CTTGAG 1 cut(s) 359
BsaJI CCNNGG 5 cut(s) 19, 121, 143, 612, 733
BsaXI ACNNNNNCTCC 3 cut(s) 30, 846, 876
Bsc4I CCNNNNNNNGG 3 cut(s) 336, 602, 830
Bse1I ACTGG 1 cut(s) 277
Bse21I CCTNAGG 2 cut(s) 411, 513
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 5 cut(s) 19, 121, 143, 612, 733
BseGI GGATG 2 cut(s) 331, 349
BseLI CCNNNNNNNGG 3 cut(s) 336, 602, 830
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 1 cut(s) 277
BseRI GAGGAG 2 cut(s) 464, 563
BseXI GCAGC 1 cut(s) 580
BseYI CCCAGC 1 cut(s) 602
BshFI GGCC 4 cut(s) 68, 126, 148, 809
BsiHKAI GWGCWC 1 cut(s) 497
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 3 cut(s) 336, 602, 830
BsmFI GGGAC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 202
BsnI GGCC 4 cut(s) 68, 126, 148, 809
Bsp1286I GDGCHC 2 cut(s) 395, 497
Bsp143I GATC 2 cut(s) 93, 712
Bsp19I CCATGG 1 cut(s) 733
BspACI CCGC 3 cut(s) 396, 769, 881
BspANI GGCC 4 cut(s) 68, 126, 148, 809
BspCNI CTCAG 1 cut(s) 505
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 181, 626
BspPI GGATC 2 cut(s) 101, 707
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 5 cut(s) 19, 121, 143, 612, 733
BssMI GATC 2 cut(s) 93, 712
BssT1I CCWWGG 4 cut(s) 121, 143, 612, 733
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 624
Bst6I CTCTTC 2 cut(s) 103, 648
BstC8I GCNNGC 3 cut(s) 200, 730, 811
BstDEI CTNAG 4 cut(s) 165, 411, 513, 798
BstDSI CCRYGG 1 cut(s) 733
BstENI CCTNNNNNAGG 1 cut(s) 334
BstF5I GGATG 2 cut(s) 331, 349
BstKTI GATC 2 cut(s) 96, 715
BstMBI GATC 2 cut(s) 93, 712
BstMWI GCNNNNNNNGC 5 cut(s) 123, 145, 167, 195, 725
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 580
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
Bsu36I CCTNAGG 2 cut(s) 411, 513
BsuRI GGCC 4 cut(s) 68, 126, 148, 809
BtgI CCRYGG 1 cut(s) 733
BtsCI GGATG 2 cut(s) 331, 349
BtsIMutI CAGTG 2 cut(s) 445, 547
Cac8I GCNNGC 3 cut(s) 200, 730, 811
CciI TCATGA 1 cut(s) 30
Cfr13I GGNCC 2 cut(s) 180, 639
Csp6I GTAC 1 cut(s) 379
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 4 cut(s) 165, 411, 513, 798
DpnI GATC 2 cut(s) 95, 714
DpnII GATC 2 cut(s) 93, 712
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 2 cut(s) 103, 648
EarI CTCTTC 2 cut(s) 103, 648
EciI GGCGGA 1 cut(s) 784
Ecl136II GAGCTC 1 cut(s) 495
Eco130I CCWWGG 4 cut(s) 121, 143, 612, 733
Eco147I AGGCCT 1 cut(s) 809
Eco24I GRGCYC 2 cut(s) 395, 497
Eco47I GGWCC 2 cut(s) 180, 639
Eco53kI GAGCTC 1 cut(s) 495
Eco81I CCTNAGG 2 cut(s) 411, 513
EcoICRI GAGCTC 1 cut(s) 495
EcoNI CCTNNNNNAGG 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 4 cut(s) 121, 143, 612, 733
EcoT38I GRGCYC 2 cut(s) 395, 497
ErhI CCWWGG 4 cut(s) 121, 143, 612, 733
FalI AAGNNNNNCTT 2 cut(s) 82, 114
FaqI GGGAC 1 cut(s) 36
FauI CCCGC 2 cut(s) 403, 874
Fnu4HI GCNGC 1 cut(s) 569
FokI GGATG 2 cut(s) 338, 356
FriOI GRGCYC 2 cut(s) 395, 497
Fsp4HI GCNGC 1 cut(s) 569
GluI GCNGC 1 cut(s) 569
GsaI CCCAGC 1 cut(s) 606
HaeIII GGCC 4 cut(s) 68, 126, 148, 809
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 1 cut(s) 907
HphI GGTGA 1 cut(s) 722
Hpy188III TCNNGA 5 cut(s) 31, 283, 314, 842, 933
HpyAV CCTTC 2 cut(s) 84, 799
HpyCH4III ACNGT 1 cut(s) 624
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 202, 568
HpyF10VI GCNNNNNNNGC 5 cut(s) 123, 145, 167, 195, 725
HpyF3I CTNAG 4 cut(s) 165, 411, 513, 798
HpySE526I ACGT 1 cut(s) 50
Kzo9I GATC 2 cut(s) 93, 712
LmnI GCTCC 1 cut(s) 500
Lsp1109I GCAGC 1 cut(s) 580
LweI GCATC 1 cut(s) 316
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 542
MalI GATC 2 cut(s) 95, 714
MboI GATC 2 cut(s) 93, 712
MboII GAAGA 8 cut(s) 90, 230, 257, 329, 567, 659, 662, 665
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 395, 497
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 8 cut(s) 82, 256, 691, 698, 772, 825, 837, 864
MluNI TGGCCA 1 cut(s) 68
MlyI GAGTC 1 cut(s) 916
MmeI TCCRAC 1 cut(s) 832
Mox20I TGGCCA 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 309
MscI TGGCCA 1 cut(s) 68
MseI TTAA 4 cut(s) 47, 477, 662, 900
Msp20I TGGCCA 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 202
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 5 cut(s) 123, 145, 167, 195, 725
NcoI CCATGG 1 cut(s) 733
NdeII GATC 2 cut(s) 93, 712
NlaIV GGNNCC 2 cut(s) 181, 626
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 542
NspI RCATGY 1 cut(s) 464
PagI TCATGA 1 cut(s) 30
PceI AGGCCT 1 cut(s) 809
PctI GAATGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 309
PflMI CCANNNNNTGG 1 cut(s) 602
PkrI GCNGC 1 cut(s) 570
PleI GAGTC 1 cut(s) 915
PpsI GAGTC 1 cut(s) 915
PsiI TTATAA 1 cut(s) 675
Psp124BI GAGCTC 1 cut(s) 497
Psp1406I AACGTT 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 18
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 181, 626
PspPI GGNCC 2 cut(s) 180, 639
PsrI GAACNNNNNNTAC 2 cut(s) 464, 496
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SacI GAGCTC 1 cut(s) 497
SaqAI TTAA 4 cut(s) 47, 477, 662, 900
SatI GCNGC 1 cut(s) 569
Sau3AI GATC 2 cut(s) 93, 712
Sau96I GGNCC 2 cut(s) 180, 639
SchI GAGTC 1 cut(s) 916
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 2 cut(s) 395, 497
SfaNI GCATC 1 cut(s) 316
SinI GGWCC 2 cut(s) 180, 639
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 8 cut(s) 82, 256, 691, 698, 772, 825, 837, 864
SseBI AGGCCT 1 cut(s) 809
SsiI CCGC 3 cut(s) 396, 769, 881
SstI GAGCTC 1 cut(s) 497
StuI AGGCCT 1 cut(s) 809
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 4 cut(s) 121, 143, 612, 733
TaaI ACNGT 1 cut(s) 624
TaiI ACGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 491, 835
TasI AATT 8 cut(s) 82, 256, 691, 698, 772, 825, 837, 864
Tru1I TTAA 4 cut(s) 47, 477, 662, 900
Tru9I TTAA 4 cut(s) 47, 477, 662, 900
TscAI CASTG 2 cut(s) 445, 547
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 1 cut(s) 568
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 5 cut(s) 101, 289, 485, 862, 880
TspRI CASTG 2 cut(s) 445, 547
Van91I CCANNNNNTGG 1 cut(s) 602
VpaK11BI GGWCC 2 cut(s) 180, 639
XagI CCTNNNNNAGG 1 cut(s) 334
XapI RAATTY 2 cut(s) 772, 837
XceI RCATGY 1 cut(s) 464
XmnI GAANNNNTTC 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.