RchiOBHm_Chr3g0450291

Aluminum-activated malate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0030007
Physical Location & Seq
Reverse (-)
1873335 .. 1873763
429 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
ATGAGCAACATTGCTTTGAAAGTAAGCTCTGAGTCTTCAAGAGTCATAAAAGAGCTTGCAAGGACTATGAAGACAATGAAGAAATCATCTACTATAGATTATTTAGTTGGAGAAATGAACAATGCAGTCTTGGAGCTCCAAGAGGACTTAAAATCTCTTCCTAATTTATTTATTAATCCGCAGCCACTACAAGGAGCTGACTGTCCTGAAAAAAGGAACCCAGGAGTAGTTGCTCTCATGGATATCATGCCACTTGTTACTTTAGTTTCTTTACTGACTGAGATTGCTACAAGGATTGAAGGCATGGTTAATGCAGTTGAAGAACTAGCTGAGATGGGTGAGTACAAGTCTATTGCAGATGCGAAGAATCAAAACCAGCCTGTTAGTAAAACTAATGTACCTGCAGATGAGCATAAGGAAAAGGTGTGA

Protein Analysis

142

Amino Acids

15.62

Weight (kDa)

5.09

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 6 - 62 2.4e-07 Aluminium activated malate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030007)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0450291
rosa_laevigata RLG00000025741

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 409
AciI CCGC 1 cut(s) 179
AfaI GTAC 2 cut(s) 344, 399
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 4 cut(s) 19, 39, 299, 320
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 5 cut(s) 27, 55, 136, 197, 329
AluI AGCT 5 cut(s) 27, 55, 136, 197, 329
Alw21I GWGCWC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 181
AseI ATTAAT 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 350
BaeI ACNNNNGTAYC 2 cut(s) 381, 414
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 2 cut(s) 27, 77
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 222
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 2 cut(s) 93, 402
BfuAI ACCTGC 1 cut(s) 409
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 349
BpiI GAAGAC 2 cut(s) 27, 77
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 9
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 9
BseMII CTCAG 3 cut(s) 21, 270, 321
BseXI GCAGC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 138
BspACI CCGC 1 cut(s) 179
BspCNI CTCAG 3 cut(s) 22, 271, 322
BspLI GGNNCC 1 cut(s) 218
BspMAI CTGCAG 1 cut(s) 406
BspMI ACCTGC 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 3 cut(s) 30, 279, 330
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 2 cut(s) 93, 402
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 2 cut(s) 27, 77
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 343, 398
CviAII CATG 3 cut(s) 238, 247, 304
CviJI RGCY 7 cut(s) 27, 55, 136, 184, 197, 329, 379
CviKI_1 RGCY 7 cut(s) 27, 55, 136, 184, 197, 329, 379
CviQI GTAC 2 cut(s) 343, 398
DdeI CTNAG 3 cut(s) 30, 279, 330
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 138
Eco32I GATATC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 220
EcoRV GATATC 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 138
FaeI CATG 3 cut(s) 241, 250, 307
FaiI YATR 7 cut(s) 47, 68, 95, 239, 248, 305, 414
FatI CATG 3 cut(s) 237, 246, 303
Fnu4HI GCNGC 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 1 cut(s) 326
GluI GCNGC 1 cut(s) 182
Hin1II CATG 3 cut(s) 241, 250, 307
HinfI GANTC 3 cut(s) 32, 42, 367
HphI GGTGA 1 cut(s) 350
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 39, 206
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 5 cut(s) 59, 125, 314, 356, 404
HpyF3I CTNAG 3 cut(s) 30, 279, 330
Hsp92II CATG 3 cut(s) 241, 250, 307
LmnI GCTCC 3 cut(s) 133, 141, 194
LpnPI CCDG 6 cut(s) 207, 219, 234, 389, 393, 414
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 256
MboII GAAGA 6 cut(s) 27, 82, 91, 149, 332, 376
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 1 cut(s) 163
MlyI GAGTC 2 cut(s) 41, 51
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 1 cut(s) 136
MseI TTAA 3 cut(s) 149, 174, 309
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
NlaIII CATG 3 cut(s) 241, 250, 307
NlaIV GGNNCC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 1 cut(s) 183
PleI GAGTC 2 cut(s) 40, 50
PpsI GAGTC 2 cut(s) 40, 50
PshBI ATTAAT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 218
PstI CTGCAG 1 cut(s) 406
RsaI GTAC 2 cut(s) 344, 399
RsaNI GTAC 2 cut(s) 343, 398
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 3 cut(s) 149, 174, 309
SatI GCNGC 1 cut(s) 182
SchI GAGTC 2 cut(s) 41, 51
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 138
SetI ASST 7 cut(s) 29, 57, 138, 199, 331, 403, 426
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 2 cut(s) 93, 402
Sse9I AATT 1 cut(s) 163
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 326
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 203
TasI AATT 1 cut(s) 163
TatI WGTACW 1 cut(s) 342
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 3 cut(s) 149, 174, 309
Tru9I TTAA 3 cut(s) 149, 174, 309
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 83, 92, 131
VspI ATTAAT 1 cut(s) 174
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.