Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0030007

Physical Location & Seq

Genomic Coordinates Forward (+)

47994773 .. 47995160

Gene Structure 388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025741

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTTGTGATGAGATTCTTGGAGCTCCAAGAGGACTTAAAATCTCTTCCTACTTTATTTATTAATCGGCAGCCACTACAAGGAGCTGACTGTCCTGAAAAAAGGAACCCAGGAGCAGTTGCTCTCATGGATATCATGCCACTTGTGACTTTAGCTTCTTTACTGATTGAGATTGCTAGAAGGATTGAAGGCATGGTTAATGCAGTTGAAGAACTAGCTGAGATGGGTGAGTACAAGTCTATTGCAGATGAGAAAAATCAAAACCAGCCTGTTAGTAAAACTAATGTACCTGCAGATGAGCATAAGGAAGAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT FUSC_2

Protein Analysis

106

Amino Acids

11.76

Weight (kDa)

4.66

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030007)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450291
rosa_laevigata	RLG00000025741

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	298
AfaI	GTAC	2 cut(s)	233, 288
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	188, 209
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	4 cut(s)	25, 86, 155, 218
AluI	AGCT	4 cut(s)	25, 86, 155, 218
Alw21I	GWGCWC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	70
AseI	ATTAAT	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	239
BaeI	ACNNNNGTAYC	2 cut(s)	270, 303
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	111
BfaI	CTAG	2 cut(s)	177, 215
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	107
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	2 cut(s)	51, 303
BstDEI	CTNAG	1 cut(s)	219
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	232, 287
CviAII	CATG	3 cut(s)	127, 136, 193
CviJI	RGCY	6 cut(s)	25, 73, 86, 155, 218, 268
CviKI_1	RGCY	6 cut(s)	25, 73, 86, 155, 218, 268
CviQI	GTAC	2 cut(s)	232, 287
DdeI	CTNAG	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	51, 303
EarI	CTCTTC	2 cut(s)	51, 303
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	3 cut(s)	130, 139, 196
FaiI	YATR	4 cut(s)	128, 137, 194, 303
FatI	CATG	3 cut(s)	126, 135, 192
Fnu4HI	GCNGC	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	2 cut(s)	177, 215
GluI	GCNGC	1 cut(s)	71
Hin1II	CATG	3 cut(s)	130, 139, 196
HinfI	GANTC	1 cut(s)	15
HphI	GGTGA	1 cut(s)	239
Hpy188III	TCNNGA	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	174, 182
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	3 cut(s)	203, 245, 293
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	130, 139, 196
LmnI	GCTCC	4 cut(s)	22, 30, 83, 113
LpnPI	CCDG	6 cut(s)	96, 108, 123, 278, 282, 303
Lsp1109I	GCAGC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	177, 215
MaeIII	GTNAC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	38, 221
MhlI	GDGCHC	1 cut(s)	27
MnlI	CCTC	2 cut(s)	25, 304
MseI	TTAA	3 cut(s)	38, 63, 198
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
NlaIII	CATG	3 cut(s)	130, 139, 196
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	72
PshBI	ATTAAT	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	295
RsaI	GTAC	2 cut(s)	233, 288
RsaNI	GTAC	2 cut(s)	232, 287
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	38, 63, 198
SatI	GCNGC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	6 cut(s)	27, 88, 157, 220, 292, 315
SfcI	CTRYAG	1 cut(s)	291
SspMI	CTAG	2 cut(s)	177, 215
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	92
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	3 cut(s)	38, 63, 198
Tru9I	TTAA	3 cut(s)	38, 63, 198
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	145
VspI	ATTAAT	1 cut(s)	63
XspI	CTAG	2 cut(s)	177, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.