RchiOBHm_Chr3g0454531

Glucose and ribitol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0029991
Physical Location & Seq
Reverse (-)
4627815 .. 4628382
568 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
ATGGACTCTGATGGCAGGAAAATGCCTCCTCAAAAGCAAGAATCTCAGCCTGGAAAAGAACACGCCATGAACCCTAACCCTCAGTTCTCAAACCCAGATTACAAACCCTCTAACAAGCTTCAAGGAAAGGTGGCGATAGTGACCGGAGGAGACTCCGGTATAGGGCGGGCGGTAAGCCATTACTTTGCTCAGGAGGGTGCAACTGTGGCCTTCACTTATGTGAAGGGCCAGGAGGAAACGGATGCACGTGACACACTTGAAATGATCAAGAAGGTGAAAACTGCTGATGCCAAAGACCCTATTGCAATCGCAGCTGATCTCGGTTTCGATGAAAATTGCAGGAGGGTTGTGGAGGAGGTGGTGAAAGCGTACGGGCGCATTGATATTCTGGTTAACAATGCGGCTGAGCAGTACAAGACCAGCTCGGTGGAAGATATCGATGAGGCTCGTATTGGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

153

Amino Acids

16.72

Weight (kDa)

5.11

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 43 - 149 5.8e-18 short chain dehydrogenase
adh_short_C2 PF13561 51 - 147 2.9e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0029991)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0454531
rosa_multiflora Rmu_co8458253.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 166, 170, 401
AcvI CACGTG 1 cut(s) 248
AfaI GTAC 2 cut(s) 371, 413
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 2 cut(s) 122, 260
AjnI CCWGG 2 cut(s) 49, 228
AleI CACNNNNGTG 1 cut(s) 218
AluBI AGCT 3 cut(s) 118, 314, 423
AluI AGCT 3 cut(s) 118, 314, 423
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 2 cut(s) 207, 226
ApeKI GCWGC 1 cut(s) 311
AspLEI GCGC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 286, 373
BbrPI CACGTG 1 cut(s) 248
BbvI GCAGC 1 cut(s) 323
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 2 cut(s) 51, 230
BclI TGATCA 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 144
BisI GCNGC 2 cut(s) 312, 402
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 2 cut(s) 313, 403
Bme1390I CCNGG 2 cut(s) 51, 230
BmgT120I GGNCC 1 cut(s) 226
BmrFI CCNGG 2 cut(s) 51, 230
BmsI GCATC 2 cut(s) 232, 277
Bpu10I CCTNAGC 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 405
Bsa29I ATCGAT 1 cut(s) 438
BsaAI YACGTR 1 cut(s) 248
BsaWI WCCGGW 2 cut(s) 143, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 162
BseBI CCWGG 2 cut(s) 51, 230
BseCI ATCGAT 1 cut(s) 438
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMII CTCAG 4 cut(s) 59, 95, 203, 396
BseRI GAGGAG 3 cut(s) 18, 162, 368
BseXI GCAGC 1 cut(s) 323
BshFI GGCC 2 cut(s) 209, 228
BshVI ATCGAT 1 cut(s) 438
BsiSI CCGG 2 cut(s) 144, 156
BsiWI CGTACG 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 144
BsnI GGCC 2 cut(s) 209, 228
Bsp143I GATC 2 cut(s) 264, 316
Bsp1720I GCTNAGC 1 cut(s) 405
BspACI CCGC 3 cut(s) 166, 170, 401
BspANI GGCC 2 cut(s) 209, 228
BspCNI CTCAG 4 cut(s) 58, 94, 202, 397
BspDI ATCGAT 1 cut(s) 438
BssMI GATC 2 cut(s) 264, 316
Bst2UI CCWGG 2 cut(s) 51, 230
Bst4CI ACNGT 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 4 cut(s) 45, 81, 189, 405
BstF5I GGATG 1 cut(s) 247
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 2 cut(s) 267, 319
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 264, 316
BstMWI GCNNNNNNNGC 2 cut(s) 206, 311
BstNI CCWGG 2 cut(s) 51, 230
BstSCI CCNGG 2 cut(s) 49, 228
BstV1I GCAGC 1 cut(s) 323
BstXI CCANNNNNNTGG 1 cut(s) 427
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 2 cut(s) 209, 228
BsuTUI ATCGAT 1 cut(s) 438
BtsCI GGATG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 1 cut(s) 378
Cfr13I GGNCC 1 cut(s) 226
ClaI ATCGAT 1 cut(s) 438
Csp6I GTAC 2 cut(s) 370, 412
CviAII CATG 1 cut(s) 67
CviJI RGCY 9 cut(s) 49, 118, 177, 209, 228, 314, 404, 423, 446
CviKI_1 RGCY 9 cut(s) 49, 118, 177, 209, 228, 314, 404, 423, 446
CviQI GTAC 2 cut(s) 370, 412
DdeI CTNAG 4 cut(s) 45, 81, 189, 405
DpnI GATC 2 cut(s) 266, 318
DpnII GATC 2 cut(s) 264, 316
Eco32I GATATC 1 cut(s) 436
Eco72I CACGTG 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 49, 228
EcoRV GATATC 1 cut(s) 436
FaeI CATG 1 cut(s) 70
FaiI YATR 3 cut(s) 68, 161, 219
FatI CATG 1 cut(s) 66
FauI CCCGC 1 cut(s) 159
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 312, 402
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 312, 402
GlaI GCGC 1 cut(s) 377
GluI GCNGC 2 cut(s) 312, 402
HaeIII GGCC 2 cut(s) 209, 228
HapII CCGG 2 cut(s) 144, 156
HhaI GCGC 1 cut(s) 378
Hin1II CATG 1 cut(s) 70
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 3 cut(s) 5, 41, 152
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 2 cut(s) 144, 156
HphI GGTGA 2 cut(s) 286, 373
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 2 cut(s) 191, 268
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 3 cut(s) 217, 220, 265
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 4 cut(s) 200, 245, 305, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 311
HpyF3I CTNAG 4 cut(s) 45, 81, 189, 405
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 1 cut(s) 70
HspAI GCGC 1 cut(s) 376
Ksp22I TGATCA 1 cut(s) 264
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 2 cut(s) 264, 316
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 2 cut(s) 232, 277
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 139, 248
MalI GATC 2 cut(s) 266, 318
MboI GATC 2 cut(s) 264, 316
MboII GAAGA 1 cut(s) 443
MluCI AATT 1 cut(s) 334
MlyI GAGTC 1 cut(s) 146
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 2 cut(s) 144, 156
MspR9I CCNGG 2 cut(s) 51, 230
MvaI CCWGG 2 cut(s) 51, 230
MwoI GCNNNNNNNGC 2 cut(s) 206, 311
NdeII GATC 2 cut(s) 264, 316
NlaIII CATG 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 139, 248
OliI CACNNNNGTG 1 cut(s) 218
PfeI GAWTC 1 cut(s) 41
Pfl23II CGTACG 1 cut(s) 369
PkrI GCNGC 2 cut(s) 313, 403
PleI GAGTC 1 cut(s) 146
PmaCI CACGTG 1 cut(s) 248
PmlI CACGTG 1 cut(s) 248
PpsI GAGTC 1 cut(s) 146
Ppu21I YACGTR 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 49, 228
PspCI CACGTG 1 cut(s) 248
PspGI CCWGG 2 cut(s) 49, 228
PspLI CGTACG 1 cut(s) 369
PspPI GGNCC 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 2 cut(s) 371, 413
RsaNI GTAC 2 cut(s) 370, 412
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 2 cut(s) 312, 402
Sau3AI GATC 2 cut(s) 264, 316
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 51, 230
SetI ASST 7 cut(s) 120, 132, 250, 276, 316, 360, 425
SfaNI GCATC 2 cut(s) 232, 277
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 1 cut(s) 334
SsiI CCGC 3 cut(s) 166, 170, 401
StyD4I CCNGG 2 cut(s) 49, 228
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 250
TaqI TCGA 2 cut(s) 327, 438
TasI AATT 1 cut(s) 334
TatI WGTACW 1 cut(s) 411
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TseFI GTSAC 2 cut(s) 139, 248
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 2 cut(s) 139, 248
TspDTI ATGAA 2 cut(s) 83, 345
TspGWI ACGGA 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.